software . 2021

TRON-Bioinformatics/covigator-ngs-pipeline: Release v0.5.0

Riesgo-Ferreiro, Pablo; Sorn, Patrick; Bukur, Thomas;
Open Access
  • Published: 08 Jul 2021
  • Publisher: Zenodo
Abstract
Major changes: Add coverage analysis for FASTQ pipeline Add Pfam domain annotations in the output VCFs Add ConsHMM conservation scores annotations in the output VCFs Minor changes: Parametrise chromosome for FASTA pipeline, default is the Sars-CoV-2 chromosome Parametrise global alignment parameters Avoid calling external Nextflow workflows and reimplement internally due to performance reasons. Logic does not change
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COVID-19
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Zenodo
Software . 2021
Provider: Datacite
Zenodo
Software . 2021
Provider: Datacite
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