publication . Article . 2011

Recombination in eukaryotic single stranded DNA viruses

Darren P. Martin; Philippe Biagini; Pierre Lefeuvre; Michael Golden; Philippe Roumagnac; Arvind Varsani;
Open Access English
  • Published: 13 Sep 2011
  • Publisher: HAL CCSD
  • Country: France
Abstract
Although single stranded (ss) DNA viruses that infect humans and their domesticated animals do not generally cause major diseases, the arthropod borne ssDNA viruses of plants do, and as a result seriously constrain food production in most temperate regions of the world. Besides the well known plant and animal-infecting ssDNA viruses, it has recently become apparent through metagenomic surveys of ssDNA molecules that there also exist large numbers of other diverse ssDNA viruses within almost all terrestrial and aquatic environments. The host ranges of these viruses probably span the tree of life and they are likely to be important components of global ecosystems....
Persistent Identifiers
Subjects
Medical Subject Headings: viruses
free text keywords: parvovirus, geminivirus, anellovirus, circovirus, nanovirus, [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology, Review, Anthropologie biologique, Biological anthropology, parvovirus;geminivirus;anellovirus;circovirus;nanovirus, L73 - Maladies des animaux, S50 - Santé humaine, Genetic recombination, Recombination, Virus, Viral evolution, Genetics, DNA, chemistry.chemical_compound, chemistry, Biology, Virus classification, Homologous recombination, Reassortment, lcsh:Microbiology, lcsh:QR1-502
Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
Communities
Agricultural and Food Sciences
COVID-19
Agritrop
Article . 2011
Provider: Agritrop
Viruses
Article . 2011
Viruses
Article
Provider: UnpayWall
257 references, page 1 of 18

1. Blinkova, O.; Rosario, K.; Li, L.; Kapoor, A.; Slikas, B.; Bernardin, F.; Breitbart, M.; Delwart, E. Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the united states. J. Clin. Microbiol. 2009, 47, 3507-3513.

2. Blinkova, O.; Victoria, J.; Li, Y.Y.; Keele, B.F.; Sanz, C.; Ndjango, J.B.N.; Peeters, M.; Travis, D.; Lonsdorf, E.V.; Wilson, M.L.; et al. Novel circular DNA viruses in stool samples of wildliving chimpanzees. J. Gen. Virol. 2010, 91, 74-86.

3. Kim, K.H.; Chang, H.W.; Nam, Y.D.; Roh, S.W.; Kim, M.S.; Sung, Y.; Jeon, C.O.; Oh, H.M.; Bae, J.W. Amplification of uncultured single-stranded DNA viruses from rice paddy soil. Appl. Environ. Microbiol. 2008, 74, 5975-5985.

4. Krupovic, M.; Ravantti, J.J.; Bamford, D.H. Geminiviruses: A tale of a plasmid becoming a virus. BMC Evol. Biol. 2009, 9, 112.

5. Lopez-Bueno, A.; Tamames, J.; Velazquez, D.; Moya, A.; Quesada, A.; Alcami, A. High diversity of the viral community from an antarctic lake. Science 2009, 326, 858-861.

6. Yu, X.; Li, B.; Fu, Y.P.; Jiang, D.H.; Ghabrial, S.A.; Li, G.Q.; Peng, Y.L.; Xie, J.T.; Cheng, J.S.; Huang, J.B.; et al. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 8387-8392.

7. Rosario, K.; Duffy, S.; Breitbart, M. Diverse circovirus-like genome architectures revealed by environmental metagenomics. J. Gen. Virol. 2009, 90, 2418-2424. [OpenAIRE]

8. Nishigawa, H.; Oshima, K.; Kakizawa, S.; Jung, H.; Kuboyama, T.; Miyata, S.; Ugaki, M.; Namba, S. Evidence of intermolecular recombination between extrachromosomal dnas in phytoplasma: A trigger for the biological diversity of phytoplasma? Microbiology 2002, 148, 1389-1396.

9. Campos-Olivas, R.; Louis, J.M.; Clerot, D.; Gronenborn, B.; Gronenborn, A.M. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. U. S. A. 2002, 99, 10310-10315.

10. Koonin, E.V.; Ilyina, T.V. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA-replication initiator proteins. J. Gen. Virol. 1992, 73, 2763-2766. [OpenAIRE]

11. Ilyina, T.V.; Koonin, E.V. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 1992, 20, 3279-3285.

12. Londono, A.; Riego-Ruiz, L.; Arguello-Astorga, G.R. DNA-binding specificity determinants of replication proteins encoded by eukaryotic ssdna viruses are adjacent to widely separated rcr conserved motifs. Arch. Virol. 2010, 155, 1033-1046.

13. Koonin, E.V. On the origin of cells and viruses primordial virus world scenario. Ann. NY Acad. Sci. 2009, 1178, 47-64. [OpenAIRE]

14. Koonin, E.V.; Senkevich, T.G.; Dolja, V.V. The ancient virus world and evolution of cells. Biol. Direct 2006, 1, 29.

15. Shackelton, L.A.; Holmes, E.C. Phylogenetic evidence for the rapid evolution of human b19 erythrovirus. J. Virol. 2006, 80, 3666-3669.

257 references, page 1 of 18
Abstract
Although single stranded (ss) DNA viruses that infect humans and their domesticated animals do not generally cause major diseases, the arthropod borne ssDNA viruses of plants do, and as a result seriously constrain food production in most temperate regions of the world. Besides the well known plant and animal-infecting ssDNA viruses, it has recently become apparent through metagenomic surveys of ssDNA molecules that there also exist large numbers of other diverse ssDNA viruses within almost all terrestrial and aquatic environments. The host ranges of these viruses probably span the tree of life and they are likely to be important components of global ecosystems....
Persistent Identifiers
Subjects
Medical Subject Headings: viruses
free text keywords: parvovirus, geminivirus, anellovirus, circovirus, nanovirus, [SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology, Review, Anthropologie biologique, Biological anthropology, parvovirus;geminivirus;anellovirus;circovirus;nanovirus, L73 - Maladies des animaux, S50 - Santé humaine, Genetic recombination, Recombination, Virus, Viral evolution, Genetics, DNA, chemistry.chemical_compound, chemistry, Biology, Virus classification, Homologous recombination, Reassortment, lcsh:Microbiology, lcsh:QR1-502
Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
Communities
Agricultural and Food Sciences
COVID-19
Agritrop
Article . 2011
Provider: Agritrop
Viruses
Article . 2011
Viruses
Article
Provider: UnpayWall
257 references, page 1 of 18

1. Blinkova, O.; Rosario, K.; Li, L.; Kapoor, A.; Slikas, B.; Bernardin, F.; Breitbart, M.; Delwart, E. Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the united states. J. Clin. Microbiol. 2009, 47, 3507-3513.

2. Blinkova, O.; Victoria, J.; Li, Y.Y.; Keele, B.F.; Sanz, C.; Ndjango, J.B.N.; Peeters, M.; Travis, D.; Lonsdorf, E.V.; Wilson, M.L.; et al. Novel circular DNA viruses in stool samples of wildliving chimpanzees. J. Gen. Virol. 2010, 91, 74-86.

3. Kim, K.H.; Chang, H.W.; Nam, Y.D.; Roh, S.W.; Kim, M.S.; Sung, Y.; Jeon, C.O.; Oh, H.M.; Bae, J.W. Amplification of uncultured single-stranded DNA viruses from rice paddy soil. Appl. Environ. Microbiol. 2008, 74, 5975-5985.

4. Krupovic, M.; Ravantti, J.J.; Bamford, D.H. Geminiviruses: A tale of a plasmid becoming a virus. BMC Evol. Biol. 2009, 9, 112.

5. Lopez-Bueno, A.; Tamames, J.; Velazquez, D.; Moya, A.; Quesada, A.; Alcami, A. High diversity of the viral community from an antarctic lake. Science 2009, 326, 858-861.

6. Yu, X.; Li, B.; Fu, Y.P.; Jiang, D.H.; Ghabrial, S.A.; Li, G.Q.; Peng, Y.L.; Xie, J.T.; Cheng, J.S.; Huang, J.B.; et al. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 8387-8392.

7. Rosario, K.; Duffy, S.; Breitbart, M. Diverse circovirus-like genome architectures revealed by environmental metagenomics. J. Gen. Virol. 2009, 90, 2418-2424. [OpenAIRE]

8. Nishigawa, H.; Oshima, K.; Kakizawa, S.; Jung, H.; Kuboyama, T.; Miyata, S.; Ugaki, M.; Namba, S. Evidence of intermolecular recombination between extrachromosomal dnas in phytoplasma: A trigger for the biological diversity of phytoplasma? Microbiology 2002, 148, 1389-1396.

9. Campos-Olivas, R.; Louis, J.M.; Clerot, D.; Gronenborn, B.; Gronenborn, A.M. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. U. S. A. 2002, 99, 10310-10315.

10. Koonin, E.V.; Ilyina, T.V. Geminivirus replication proteins are related to prokaryotic plasmid rolling circle DNA-replication initiator proteins. J. Gen. Virol. 1992, 73, 2763-2766. [OpenAIRE]

11. Ilyina, T.V.; Koonin, E.V. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 1992, 20, 3279-3285.

12. Londono, A.; Riego-Ruiz, L.; Arguello-Astorga, G.R. DNA-binding specificity determinants of replication proteins encoded by eukaryotic ssdna viruses are adjacent to widely separated rcr conserved motifs. Arch. Virol. 2010, 155, 1033-1046.

13. Koonin, E.V. On the origin of cells and viruses primordial virus world scenario. Ann. NY Acad. Sci. 2009, 1178, 47-64. [OpenAIRE]

14. Koonin, E.V.; Senkevich, T.G.; Dolja, V.V. The ancient virus world and evolution of cells. Biol. Direct 2006, 1, 29.

15. Shackelton, L.A.; Holmes, E.C. Phylogenetic evidence for the rapid evolution of human b19 erythrovirus. J. Virol. 2006, 80, 3666-3669.

257 references, page 1 of 18
Any information missing or wrong?Report an Issue