Quick search
Advanced search in
Research outcomes
Field to searchTerm
Add rule
The following results are related to COVID-19. Are you interested to view more results? Visit OpenAIRE - Explore.
Download Results
20 research outcomes, page 1 of 2
  • software . 2022
    Open Source .py, .sh, .csv, .json, .txt, .fa, .fastq, .tsv, .fasta, .png, .md, .svg
    Authors:
    Anton, Matei;
    Publisher: 4TU.ResearchData
    Country: Netherlands

    Code used together with its results for the paper as part of my Bachelor's Thesis project. The research consists of optimizing the kallisto algorithm for predicting the abundances of SARS-CoV-2 variants in wastewater samples. Specifically, I look at how only sequencing ...

  • software . 2021
    Open Source C++
    Authors:
    Pucci, Fabrizio; Rooman, Marianne;
    Publisher: bio.tools

    SpikePro algorithm predicts the fitness of a SARS-CoV-2 strain from the sequence of its spike protein. Given the target sequence in fasta format, the algorithm aligns it to the reference SARS-CoV-2 spike protein, list all mutations with respect to the reference and comp...

  • software . 2021
    Open Source Python
    Authors:
    Deveson, Ira W.;
    Publisher: bio.tools

    InterARTIC is an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.

  • software . 2021
    Open Source English
    Authors:
    Cadena Pico, Jose E.; Soper, Braden C.; Ray, Pryadip; Mguyen, Chanh P.; Chan, Ryan;
    Persistent Identifiers
    Publisher: Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)

    Background: Machine learning (ML) based risk stratification models of Electronic Health records (EHR) data may help to optimize treatment of COVID-19 patients, but are often limited by their lack of clinical interpretability and cost of laboratory tests. We develop a ML...

    Add to ORCIDorcid
  • software . 2021
    Open Source R
    Authors:
    Marchionni, Luigi;
    Publisher: bio.tools

    The package covid19census provides functions to extract COVID-19 cases, deaths, hospitalizations and test of U.S. and Italy at the county and regional level, respectively, and then combines them with other population metrics (age, sex, prevalence of chronic conditions, ...

  • software . 2021
    Open Source Python
    Authors:
    Lu, Zhiyong;
    Publisher: bio.tools

    COVID-19-CT-CXR is a public database of COVID-19 CXR and CT images, which are automatically extracted from COVID-19-relevant articles from the PubMed Central Open Access (PMC-OA) Subset.

  • software . 2021
    Open Source R
    Authors:
    Hu, Cindy;
    Publisher: bio.tools

    19 and Me: COVID-19 Risk Score Calculator is a tool that synthesizes reported COVID-19 geographic case data and rapidly evolving scientific research to help you ballpark how much risk this disease poses to you.

  • software . 2021
    Open Source
    Authors:
    Psomopoulos, Fotis E.;
    Publisher: bio.tools

    Lineagespot is a framework written in R, and aims to identify and assign different SARS-CoV-2 lineages based on a single variant file (i.e., variant calling format).

  • software . 2021
    Open Source English
    Authors:
    Higa, Kenneth; Ushizima, Daniela;
    Persistent Identifiers
    Publisher: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

    From a single data description file, this package generates a simple but complete RESTful web interface to a relational database, in the form of containers that run in a Docker environment. This initial version produces containers that are intended for use on the NERSC ...

    Add to ORCIDorcid
  • software . 2021
    Open Source
    Authors:
    Alser, Mohammed;
    Publisher: bio.tools

    COVIDHunter is an accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental condition...

20 research outcomes, page 1 of 2