SpikePro algorithm predicts the fitness of a SARS-CoV-2 strain from the sequence of its spike protein. Given the target sequence in fasta format, the algorithm aligns it to the reference SARS-CoV-2 spike protein, list all mutations with respect to the reference and comp...

InterARTIC is an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.

Background: Machine learning (ML) based risk stratification models of Electronic Health records (EHR) data may help to optimize treatment of COVID-19 patients, but are often limited by their lack of clinical interpretability and cost of laboratory tests. We develop a ML...

19 and Me: COVID-19 Risk Score Calculator is a tool that synthesizes reported COVID-19 geographic case data and rapidly evolving scientific research to help you ballpark how much risk this disease poses to you.

The package covid19census provides functions to extract COVID-19 cases, deaths, hospitalizations and test of U.S. and Italy at the county and regional level, respectively, and then combines them with other population metrics (age, sex, prevalence of chronic conditions, ...

COVID-19-CT-CXR is a public database of COVID-19 CXR and CT images, which are automatically extracted from COVID-19-relevant articles from the PubMed Central Open Access (PMC-OA) Subset.

Lineagespot is a framework written in R, and aims to identify and assign different SARS-CoV-2 lineages based on a single variant file (i.e., variant calling format).

From a single data description file, this package generates a simple but complete RESTful web interface to a relational database, in the form of containers that run in a Docker environment. This initial version produces containers that are intended for use on the NERSC ...

CoVerifi is a COVID-19 news verification system. It is a web application which combines both the power of machine learning and the power of human feedback to assess the credibility of news. By allowing users the ability to “vote” on news content, the CoVerifi platform e...

COVIDHunter is an accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental condition...