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The following results are related to COVID-19. Are you interested to view more results? Visit OpenAIRE - Explore.
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23 research outcomes, page 1 of 3
  • software . 2022
    Open Source
    Authors:
    Sandholtz, Sarah H; Drocco, Jeffrey A;
    Publisher: DOE CODE

    The TargetID pipeline enables rapid identification and characterization of binding sites in SARS-CoV-2 proteins as well as the core chemical components with which these sites interact.

  • software . 2022
    Open Source .py, .sh, .csv, .json, .txt, .fa, .fastq, .tsv, .fasta, .png, .md, .svg
    Authors:
    Anton, Matei;
    Publisher: 4TU.ResearchData
    Country: Netherlands

    Code used together with its results for the paper as part of my Bachelor's Thesis project. The research consists of optimizing the kallisto algorithm for predicting the abundances of SARS-CoV-2 variants in wastewater samples. Specifically, I look at how only sequencing ...

  • software . 2021
    Open Source C++
    Authors:
    Pucci, Fabrizio; Rooman, Marianne;
    Publisher: bio.tools

    SpikePro algorithm predicts the fitness of a SARS-CoV-2 strain from the sequence of its spike protein. Given the target sequence in fasta format, the algorithm aligns it to the reference SARS-CoV-2 spike protein, list all mutations with respect to the reference and comp...

  • software . 2021
    Open Source Python
    Authors:
    Deveson, Ira W.;
    Publisher: bio.tools

    InterARTIC is an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.

  • software . 2021
    Open Source
    Authors:
    Cadena Pico, Jose; Soper, Braden; Ray, Pryadip; Mguyen, Chanh; Chan, Ryan;
    Persistent Identifiers
    Publisher: DOE CODE

    Background: Machine learning (ML) based risk stratification models of Electronic Health records (EHR) data may help to optimize treatment of COVID-19 patients, but are often limited by their lack of clinical interpretability and cost of laboratory tests. We develop a ML...

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  • software . 2021
    Open Source
    Authors:
    Kubicek-Sutherland, Jessica; Yusim, Karina; Theiler, James; Foley, Brian; Stromberg, Zachary; Gans, Jason;
    Publisher: DOE CODE

    Here we have developed a pipeline for the fast evaluation of viral emerging risks (FEVER) that generates primer and probe sets for genetically diverse viruses. The goal of probe design is to produce a short nucleotide sequence (called a K-mer, as it is of length K) that...

  • software . 2021
    Open Source
    Authors:
    Goldberg, Emma; Romero-Severson, Ethan;
    Publisher: DOE CODE

    I am submitting an umbrella/blanket disclosure because I am working on several inter-related projects in a fast-moving research area. The general theme is statistical analysis and visualization of SARS-CoV-2 viral genetic sequence data in order to learn about epidemiolo...

  • software . 2021
    Open Source R
    Authors:
    Marchionni, Luigi;
    Publisher: bio.tools

    The package covid19census provides functions to extract COVID-19 cases, deaths, hospitalizations and test of U.S. and Italy at the county and regional level, respectively, and then combines them with other population metrics (age, sex, prevalence of chronic conditions, ...

  • software . 2021
    Open Source Python
    Authors:
    Lu, Zhiyong;
    Publisher: bio.tools

    COVID-19-CT-CXR is a public database of COVID-19 CXR and CT images, which are automatically extracted from COVID-19-relevant articles from the PubMed Central Open Access (PMC-OA) Subset.

  • software . 2021
    Open Source R
    Authors:
    Hu, Cindy;
    Publisher: bio.tools

    19 and Me: COVID-19 Risk Score Calculator is a tool that synthesizes reported COVID-19 geographic case data and rapidly evolving scientific research to help you ballpark how much risk this disease poses to you.

23 research outcomes, page 1 of 3