Lineagespot is a framework written in R, and aims to identify and assign different SARS-CoV-2 lineages based on a single variant file (i.e., variant calling format).

CoVerifi is a COVID-19 news verification system. It is a web application which combines both the power of machine learning and the power of human feedback to assess the credibility of news. By allowing users the ability to “vote” on news content, the CoVerifi platform e...

COVIDHunter is an accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental condition...

nfcore/viralrecon is a bioinformatics analysis pipeline used to perform assembly and intra-host/low-frequency variant calling for viral samples. The pipeline supports short-read Illumina sequencing data from both shotgun (e.g. sequencing directly from clinical samples) ...

<p>This repository contains the code and data to reproduce the results from the manuscript T&quot;he impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia&quot;, doi: <a href="https://doi.org/10.1101/2020.12.02.20240648">10.1101/2020.12.02...

<p>This folder contains the code files and external data necessary to reproduce the analysis and results from the paper &quot;Air pollution impacts of COVID-19-related containment measures&quot; by Chossi&egrave;re et al. (2020).</p>

<p>This repository documents the data processing and analysis code associated with the article&nbsp;<strong>&quot;Exposure Density and Neighborhood Disparities in COVID-19 Infection Risk&quot;</strong>&nbsp;published in&nbsp;<em>PNAS</em>.</p>

<strong>eps-3.2.0-us - Apr. 19, 2021</strong> <ul> <li>New Features<ul> <li>Added more detail to the Industry Category subscript, increasing the number of separately broken out industries from 8 to 25</li> <li>Added new policy lever to enable mandated power plant retire...

<p>Scripts to support design and analysis of SPAR-seq applications to detect pathogens within host material, such as SARS-CoV-2 in clinical swabs. Initial release</p>

<p>In this research dataset, we investigate the ability of open license knowledge graphs to represent COVID-19 information in a fully structured format and to visualize a synthesis of the obtained information using SPARQL. Our work mainly regards the evaluation of this ...