This repository contains data for the main text figures plus some supplementary information in the pre-print: Kikstra et al., 2022, GMD, "The IPCC Sixth Assessment Report WGIII climate assessment of mitigation pathways: from emissions to global temperatures" D...

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

This work is about Covid-19 vaccines tweets sentiment analysis using a big data set and generating the wordcloud and timeseries graphs. We created a compute and a visualization library for Brane, and additionally, we created a workflow to use both of them.

This repo includes data and code required to replicate the results in the paper "Associations between mortality from Covid-19 and other causes: A state-level analysis"

Files associated with the paper "COVID-19 clusters in schools: frequency, size, and transmission rates from crowdsourced exposure reports".

Data and codes for the manuscript "An assessment of transmission dynamics via time-varying reproduction number of the second wave of the COVID-19 epidemic in Fiji".

Data and codes for the manuscript "An assessment of transmission dynamics via time-varying reproduction number of the second wave of the COVID-19 epidemic in Fiji"

Code for the pre-print : Ferté, Thomas and Jouhet, Vianney and Griffier, Romain and Hejblum, Boris P. and Thiébaut, Rodolphe and crisis Task, Bordeaux University Hospital Covid-19, The Benefit of Augmenting Open Data with Clinical Data-Warehouse EHR for Fo...

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Code and simulated data for the manuscript "Age and sex-specific risks of myocarditis and pericarditis following Covid-19 messenger RNA Vaccines" by Le Vu et al.