virusMS is a database for synthetic peptides of viruses with mass spectrometry. It is a tool for resourcing, annotating, and analysing synthetic peptides of SARS-CoV-2 for immunopeptidomics and other immunological studies.

SpikePro algorithm predicts the fitness of a SARS-CoV-2 strain from the sequence of its spike protein. Given the target sequence in fasta format, the algorithm aligns it to the reference SARS-CoV-2 spike protein, list all mutations with respect to the reference and comp...

OpenSAFELY is a secure analytics platform for electronic health records in the NHS, delivering analyses across more than 58 million patients’ records anddeliver urgent results during the global COVID-19 emergency.

phastSim is a Python package for efficient simulation of sequence evolution for pandemic-scale datasets. Fast sequence evolution simulation for SARS-CoV-2 phylogenies and other genomic epidemiological datasets. phastSim is available either through PyPi or by cloning thi...

OmicsViz is an integrative web-based analysis of omics data for study of drugs against SARS-CoV-2.

Model-M is an agent-based epidemic model of a middle-sized municipality. Model M is an agent-based epidemic model for COVID-19 computational experiments on realistic multi-graph social networks. It allows to simulate projections of main epidemic indicators with respect ...

Mini-COVIDNet is a efficient lightweight deep neural network for ultrasound-based point-of-care detection of COVID-19.

WHO Coronavirus (COVID-19) Dashboard With Vaccination Data presents official daily counts of COVID-19 cases and deaths worldwide, along with vaccination rates and other vaccination data, while providing a hub to other resources. Interactive tools, including maps, epidem...

InterARTIC is an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.

HYPER is a simple, flexible, and efficient pooled testing strategy for group testing via hypergraph factorization applied to COVID-19.