Documentation for the COVID-19 KnetGraph SPARQL and Cypher endpoints

# Digital Contact Tracing This package provides the simulation, analysis, and figure code for<br> the manuscript "Digital contact tracing contributes little to COVID-19<br> outbreak containment" by A. Burdinski, D. Brockmann, and B. F. Maier. ## Prerequisites The analys...

Taxonomy graph for COVID-19 data

This model allocates a limited daily supply of vaccines, where the allocations are coupled with dynamics of disease transmissions. It was used in a recent paper Han, S., Cai J., Yang J. et al (2021). Time-varying optimization of COVID-19 vaccine prioritization in the co...

Data and code for paper "<strong>Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence</strong>", now under revision. The repository contains: two files for each of 44 locations (including 19 countries and 25 US states) CoV_&lt;location&gt;_mut5_ob...

This model allocates a limited daily supply of vaccines, where the allocations are coupled with dynamics of disease transmissions. It was used in a recent paper Han, S., Cai J., Yang J. et al (2021). Time-varying optimization of COVID-19 vaccine prioritization in the co...

The release of COVID-CDR v1.0 "An Integrative resource for network-based investigation of COVID-19 combinatoric drug repositioning and mechanism of action" published in Patterns.

http://airborne.cam helps users understand how their surroundings and day-to-day behaviour can be adapted in order to minimise the risk of indoors transmission of the SARS-CoV-2 virus. The app is based on the well-mixed approach to calculate the individual risk of infec...

A SARS-CoV-2 Mutation Pattern Query Tool

Major changes: Add coverage analysis for FASTQ pipeline Add Pfam domain annotations in the output VCFs Add ConsHMM conservation scores annotations in the output VCFs Minor changes: Parametrise chromosome for FASTA pipeline, default is the Sars-CoV-2 chromosome Parametri...