- home
- Advanced Search
- EU-CONEXUS
- Publications
- Other literature type
- HAL-Pasteur
- EU-CONEXUS
- Publications
- Other literature type
- HAL-Pasteur
Loading
description Publicationkeyboard_double_arrow_right Article 2021 France, Netherlands, Denmark, Denmark, France, France, France, FrancePublisher:F1000 Research Ltd Funded by:EC | BioExcel-2, EC | EOSC-LifeEC| BioExcel-2 ,EC| EOSC-LifeAnna-Lena Lamprecht; Magnus Palmblad; Jon Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; A. Amor; Salvador Capella-Gutierrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; Carole Goble; Timothy J. Griffin; Paul Groth; Hans Ienasescu; Pratik D. Jagtap; Matúš Kalaš; Vedran Kasalica; Alireza Khanteymoori; Tobias Kuhn; Hailiang Mei; Hervé Ménager; Steffen Möller; Robin A. Richardson; Vincent Robert; Stian Soiland-Reyes; Robert Stevens; Szoke Szaniszlo; Suzan Verberne; Aswin Verhoeven; Katherine Wolstencroft;pmid: 34804501
pmc: PMC8573700
Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack of standards for annotation, assembly, and implementation. Recent technological advances have returned the long-standing vision of automated workflow composition into focus. This article summarizes a recent Lorentz Center workshop dedicated to automated composition of workflows in the life sciences. We survey previous initiatives to automate the composition process, and discuss the current state of the art and future perspectives. We start by drawing the “big picture” of the scientific workflow development life cycle, before surveying and discussing current methods, technologies and practices for semantic domain modelling, automation in workflow development, and workflow assessment. Finally, we derive a roadmap of individual and community-based actions to work toward the vision of automated workflow development in the forthcoming years. A central outcome of the workshop is a general description of the workflow life cycle in six stages: 1) scientific question or hypothesis, 2) conceptual workflow, 3) abstract workflow, 4) concrete workflow, 5) production workflow, and 6) scientific results. The transitions between stages are facilitated by diverse tools and methods, usually incorporating domain knowledge in some form. Formal semantic domain modelling is hard and often a bottleneck for the application of semantic technologies. However, life science communities have made considerable progress here in recent years and are continuously improving, renewing interest in the application of semantic technologies for workflow exploration, composition and instantiation. Combined with systematic benchmarking with reference data and large-scale deployment of production-stage workflows, such technologies enable a more systematic process of workflow development than we know today. We believe that this can lead to more robust, reusable, and sustainable workflows in the future.
NARCIS arrow_drop_down Europe PubMed CentralArticle . 2021 . Peer-reviewedFull-Text: http://europepmc.org/articles/PMC8573700Data sources: PubMed CentralLeiden University Scholarly Publications Repository; NARCISOther literature type . Article . 2021License: CC BYUniversity of Southern Denmark Research Output; F1000ResearchOther literature type . Article . 2021Data sources: University of Southern Denmark Research OutputF1000ResearchArticle . 2021Online Research Database In TechnologyArticle . 2021 . Peer-reviewedData sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.12688/f1000research.54159.1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 7 citations 7 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert NARCIS arrow_drop_down Europe PubMed CentralArticle . 2021 . Peer-reviewedFull-Text: http://europepmc.org/articles/PMC8573700Data sources: PubMed CentralLeiden University Scholarly Publications Repository; NARCISOther literature type . Article . 2021License: CC BYUniversity of Southern Denmark Research Output; F1000ResearchOther literature type . Article . 2021Data sources: University of Southern Denmark Research OutputF1000ResearchArticle . 2021Online Research Database In TechnologyArticle . 2021 . Peer-reviewedData sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.12688/f1000research.54159.1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 Italy, United Kingdom, France, United States, Netherlands, United States, Netherlands, Netherlands, United StatesPublisher:Springer Science and Business Media LLC Funded by:NIH | High Performance Simulati..., EC | SyMBioSys, UKRI | MultiMod, flexible manage... +18 projectsNIH| High Performance Simulation Libraries for Systems Biology ,EC| SyMBioSys ,UKRI| MultiMod, flexible management for multi-scale multi-approach models in biology ,NIH| Hardening Software for Rule-based Modeling ,NIH| Core_Training ,NIH| Modeling Early Immunity to Human Influenza Infection ,NIH| COPASI software for modeling and simulation of biochemical networks ,UKRI| CENTRE FOR SYNTHETIC BIOLOGY OF FINE AND SPECIALITY CHEMICALS ,NIH| A predictive multi-scale model of the immune system: An integrated computational resource for interdisciplinary applications. ,NSF| EAGER: A Standard Enabled Workflow for Synthetic Biology ,UKRI| IFS-NET: Insect Food Security NETwork ,NIH| Development and Support of the Pathway Tools Software [SRI Proposal ECU 15-631] ,NIH| National Resource for Cell Analysis and Modeling ,EC| EU-STANDS4PM ,NIH| Bringing BioNetGen Rule-Based Modeling to Virtual Cell Users ,NIH| Toward whole-cell models for precision medicine and synthetic biology ,NIH| Center for Reproducible Systems for Biomedical Modeling ,NIH| Continued Support of Essential SBML Software and Community Resources ,NSF| FET: Medium: Collaborative Research: An Efficient Framework for the Stochastic Verification of Computation and Communication Systems Using Emerging Technologies ,FCT| ERGODiC ,NIH| Genome-scale in silico Model for E.coliSarah M. Keating; Dagmar Waltemath; Matthias König; Fengkai Zhang; Andreas Dräger; Claudine Chaouiya; Frank Bergmann; Andrew Finney; Colin S. Gillespie; Tomáš Helikar; Stefan Hoops; Rahuman S Malik-Sheriff; Stuart L. Moodie; Ion I. Moraru; Chris J. Myers; Aurélien Naldi; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Maciej J. Swat; Denis Thieffry; Leandro Watanabe; Darren J. Wilkinson; Michael L. Blinov; Kimberly Begley; James R. Faeder; Harold F. Gómez; Thomas M. Hamm; Yuichiro Inagaki; Wolfram Liebermeister; Allyson L. Lister; Daniel Lucio; Eric Mjolsness; Carole J. Proctor; Karthik Raman; Nicolas Rodriguez; Clifford A. Shaffer; Bruce E. Shapiro; Joerg Stelling; Neil Swainston; Naoki Tanimura; John Wagner; Martin Meier-Schellersheim; Herbert M. Sauro; Bernhard O. Palsson; Hamid Bolouri; Hiroaki Kitano; Akira Funahashi; Henning Hermjakob; John Doyle; Michael Hucka; Richard R. Adams; Nicholas Alexander Allen; Bastian R. Angermann; Marco Antoniotti; Gary D. Bader; Jan Červený; Mélanie Courtot; Christopher Cox; Piero Dalle Pezze; Emek Demir; William S. Denney; Harish Dharuri; Julien Dorier; Dirk Drasdo; Ali Ebrahim; Johannes Eichner; Johan Elf; Lukas Endler; Chris T. Evelo; Christoph Flamm; Ronan M. T. Fleming; Martina Fröhlich; Mihai Glont; Emanuel Gonçalves; Martin Golebiewski; Hovakim Grabski; Alex Gutteridge; Damon Hachmeister; Leonard A. Harris; Benjamin D. Heavner; Ron Henkel; William S. Hlavacek; Bin Hu; Daniel R. Hyduke; Hidde de Jong; Nick Juty; Peter D. Karp; Jonathan R. Karr; Douglas B. Kell; Roland Keller; Ilya Kiselev; Steffen Klamt; Edda Klipp; Christian Knüpfer; Fedor A. Kolpakov; Falko Krause; Martina Kutmon; Camille Laibe; Conor Lawless; Lu Li; Leslie M. Loew; Rainer Machné; Yukiko Matsuoka; Pedro Mendes; Huaiyu Mi; Florian Mittag; Pedro T. Monteiro; Kedar Nath Natarajan; Poul M. F. Nielsen; Tramy Nguyen; Alida Palmisano; Jean-Baptiste Pettit; Thomas Pfau; Robert Phair; Tomas Radivoyevitch; Johann M. Rohwer; Oliver A. Ruebenacker; Julio Saez-Rodriguez; Martin Scharm; Henning Schmidt; Falk Schreiber; Michael Schubert; Roman Schulte; Stuart C. Sealfon; Kieran Smallbone; Sylvain Soliman; Melanie I. Stefan; Devin P. Sullivan; Koichi Takahashi; Bas Teusink; David Tolnay; Ibrahim Vazirabad; Axel von Kamp; Ulrike Wittig; Clemens Wrzodek; Finja Wrzodek; Ioannis Xenarios; Anna Zhukova; Jeremy Zucker;pmc: PMC8411907
pmid: 32845085
Abstract Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction‐based models and packages that extend the core with features suited to other model types including constraint‐based models, reaction‐diffusion models, logical network models, and rule‐based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single‐cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution. Over the past two decades, scientists from different fields have been developing SBML, a standard format for encoding computational models in biology and medicine. This article summarizes recent progress and gives perspectives on emerging challenges.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC8411907Data sources: PubMed CentralBOA - Bicocca Open Archive; Molecular Systems Biology; Oxford University Research ArchiveOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYeScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL-Pasteur; INRIA a CCSD electronic archive server; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2020License: CC BYFull-Text: https://hal.inrae.fr/hal-02924909/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.15252/msb.20199110&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 175 citations 175 popularity Top 0.1% influence Top 10% impulse Top 0.1% Powered by BIP!visibility 4visibility views 4 Powered bymore_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC8411907Data sources: PubMed CentralBOA - Bicocca Open Archive; Molecular Systems Biology; Oxford University Research ArchiveOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYeScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL-Pasteur; INRIA a CCSD electronic archive server; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2020License: CC BYFull-Text: https://hal.inrae.fr/hal-02924909/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.15252/msb.20199110&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Other literature type , Article 2020 FrancePublisher:Elsevier BV Andreas Ravache; Karen Bourgeois; Martin Thibault; Sylvain Dromzée; Henri Weimerskirch; Sophie de Grissac; Aurélien Prudor; Anne Lorrain; Christophe E. Menkès; Valerie Allain; Paco Bustamante; Yves Letourneur; Eric Vidal;International audience; Lunar phase and illumination are known to affect nocturnal behavior of many organisms, particularly through predator-prey interactions. Visual predators can benefit from higher light levels to increase their activity, while prey may decrease their activity to avoid predation. The lower number of nocturnal seabirds observed on colonies during full moon nights has been mostly interpreted as a predation avoidance strategy. However, it is also possible that shearwaters take advantage of the moon's illumination to feed also at night, and stay at sea to forage during full moon nights. We used miniaturized GPS-loggers to obtain 179 tracks from 99 wedge-tailed shearwaters breeding in New Caledonia, to investigate moonlight effects on individual behavior. Lunar phase significantly predicted self-provisioning trip duration, with individuals performing longer trips around the full moon. However, this relationship was not significant during chick-provisioning trips when adults have to frequently return to the colony. Adults mostly returned to the colony during moonlit periods, refuting the predation avoidance theory. Tracked individuals showed an unexpectedly high amount of nocturnal foraging activity (28% of total activity), positively influenced by the presence of the moon. δ15N stable isotope values were significantly related to the percentage of nocturnal foraging, but with a weak relationship, impeding our ability to confirm that wedge-tailed shearwaters fed on different prey when foraging at night. This study suggests that reduced colony attendance around the full moon may be linked to greater at-sea foraging opportunities in distant oceanic areas than to increased predation risk on land.
Horizon / Pleins tex... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2020Data sources: ArchiMer - Institutional Archive of IfremerJournal of Experimental Marine Biology and EcologyArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-InsermArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.jembe.2020.151322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 11 citations 11 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Horizon / Pleins tex... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2020Data sources: ArchiMer - Institutional Archive of IfremerJournal of Experimental Marine Biology and EcologyArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-InsermArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.jembe.2020.151322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:The Royal Society Funded by:ANR | ANAEE-FR, ANR | AQUATHERM, ANR | PSL +1 projectsANR| ANAEE-FR ,ANR| AQUATHERM ,ANR| PSL ,ANR| DESTRESSAndréaz Dupoué; Frédéric Angelier; Cécile Ribout; Sandrine Meylan; David Rozen-Rechels; Beatriz Decencière; Simon Agostini; Jean-François Le Galliard;Animals use a variety of strategies to avoid acute dehydration and death. Yet, how chronic exposure to sub-lethal dehydration may entail physiological and fitness costs remains elusive. In this study, we experimentally tested if water restriction causes increased oxidative stress (OS) and telomere length (TL) shortening, two well-described mediators of environment–fitness relationships. We exposed 100 yearling female and male common lizards ( Zootoca vivipara ) either to a 51-day period of water restriction or to water ad libitum, followed by 45 days in common garden outdoor conditions. We measured the kinetic changes in OS and TL and found that water-restricted males had enhanced antioxidant defences and decreased oxidative damage at day 36, whereas females did not immediately respond. A month and a half after water restriction, both sexes experienced a drop in antioxidant capacity but only males exhibited significant TL shortening. In the following 3 years, we found that lizards with longer initial TL and those who maintained stronger antioxidant defences experienced higher longevity, irrespective of sex and water restriction. Together, these results unravelled sex-specific responses to water restriction, with potential applications in better understanding the physiological costs of increasing summer droughts as a result of global climate change.
Europe PubMed Centra... arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 17 citations 17 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 France, GermanyPublisher:Elsevier BV Sepideh Esmaeilirad; Alexandra Lai; Gülcin Abbaszade; Juergen Schnelle-Kreis; Ralf Zimmermann; Gaëlle Uzu; Kaspar R. Daellenbach; Francesco Canonaco; Hossein Hassankhany; Mohammad Arhami; Urs Baltensperger; André S. H. Prévôt; James J. Schauer; Jean-Luc Jaffrezo; Vahid Hosseini; Imad El Haddad;pmid: 31835192
International audience; With over 8 million inhabitants and 4 million motor vehicles on the streets, Tehran is one of the most crowded and polluted cities in the Middle East. Frequent exceedances of national daily PM2.5 limit have been reported in this city during the last decade, yet, the chemical composition and sources of fine particles are poorly determined. In the present study, 24-hour PM2.5 samples were collected at two urban sites during two separate campaigns, a one-year period from 2014 to 2015 and another three-month period at the beginning of 2017. Concentrations of organic carbon (OC), elemental carbon (EC), inorganic ions, trace metals and specific organic molecular markers were measured by chemical analysis of filter samples. The dominant mass components were organic matter (OM), sulfate and EC. With a 20% water-soluble organic carbon (WSOC) fraction, the predominance of primary anthropogenic sources (i.e. fossil fuel combustion) was anticipated. A positive matrix factorization (PMF) analysis using the ME-2 (Multilinear Engine-2) solver was then applied to this dataset. 5 factors were identified by Marker-PMF, named as traffic exhaust (TE), biomass burning (BB), industries (Ind.), nitrate-rich and sulfate-rich. Another 4 factors were identified by Metal-PMF, including, dust, vehicles (traffic non-exhaust, TNE), industries (Ind.) and heavy fuel combustion (HFC). Traffic exhaust was the dominant source with 44.5% contribution to total quantified PM2.5 mass. Sulfate-rich (24.2%) and nitrate-rich (18.4%) factors were the next major contributing sources. Dust (4.4%) and biomass burning (6.7%) also had small contributions while the total share of all other factors was < 2%. Investigating the correlations of different factors between the two sampling sites showed that traffic emissions and biomass burning were local, whereas dust, heavy fuel combustion and industrial sources were regional. Results of this study indicate that gas- and particle-phase pollutants emitted from fossil fuel combustion (mobile and stationary) are the principal origin of both primary and secondary fine aerosols in Tehran.
Horizon / Pleins tex... arrow_drop_down Publication Server of Helmholtz Zentrum München (PuSH)Article . 2020Data sources: Publication Server of Helmholtz Zentrum München (PuSH)The Science of The Total EnvironmentArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.scitotenv.2019.135330&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 35 citations 35 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Horizon / Pleins tex... arrow_drop_down Publication Server of Helmholtz Zentrum München (PuSH)Article . 2020Data sources: Publication Server of Helmholtz Zentrum München (PuSH)The Science of The Total EnvironmentArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.scitotenv.2019.135330&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Proceedings of the National Academy of Sciences Funded by:EC | OCEAN SENTINELEC| OCEAN SENTINELHenri Weimerskirch; Julien Collet; Alexandre Corbeau; Adrien Pajot; Floran Hoarau; Cédric Marteau; D. Filippi; Samantha C. Patrick;International audience; With threats to nature becoming increasingly prominent, in order for biodiversity levels to persist, there is a critical need to improve implementation of conservation measures. In the oceans, the surveillance of fisheries is complex and inadequate, such that quantifying and locating nondeclared and illegal fisheries is persistently problematic. Given that these activities dramatically impact oceanic ecosystems, through overexploitation of fish stocks and bycatch of threatened species, innovative ways to monitor the oceans are urgently required. Here, we describe a concept of “Ocean Sentinel” using animals equipped with state-of-the-art loggers which monitor fisheries in remote areas. Albatrosses fitted with loggers detecting and locating the presence of vessels and transmitting the information immediately to authorities allowed an estimation of the proportion of nondeclared fishing vessels operating in national and international waters of the Southern Ocean. We found that in international waters, more than one-third of vessels had no Automatic Identification System operating; in national Exclusive Economic Zones (EEZs), this proportion was lower on average, but variable according to EEZ. Ocean Sentinel was also able to provide unpreceded information on the attraction of seabirds to vessels, giving access to crucial information for risk-assessment plans of threatened species. Attraction differed between species, age, and vessel activity. Fishing vessels attracted more birds than other vessels, and juveniles both encountered fewer vessels and showed a lower attraction to vessels than adults. This study shows that the development of technologies offers the potential of implementing conservation policies by using wide-ranging seabirds to patrol oceans.
Europe PubMed Centra... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefMémoires en Sciences de l'Information et de la CommunicationArticle . 2020Full-Text: https://hal.science/hal-02462482/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1915499117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 59 citations 59 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!download 12download downloads 12 Powered bymore_vert Europe PubMed Centra... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefMémoires en Sciences de l'Information et de la CommunicationArticle . 2020Full-Text: https://hal.science/hal-02462482/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1915499117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Proceedings of the National Academy of Sciences Funded by:EC | DRYFUN, EC | AGREENSKILLSPLUS, ANR | FarmLandEC| DRYFUN ,EC| AGREENSKILLSPLUS ,ANR| FarmLandAuthors: Gaëtane Le Provost; Isabelle Badenhausser; Yoann Le Bagousse-Pinguet; Yann Clough; +6 AuthorsGaëtane Le Provost; Isabelle Badenhausser; Yoann Le Bagousse-Pinguet; Yann Clough; Laura Henckel; Cyrille Violle; Vincent Bretagnolle; Marilyn Roncoroni; Peter Manning; Nicolas Gross;International audience; Land-use change is a major driver of biodiversity loss worldwide. Although biodiversity often shows a delayed response to land-use change, previous studies have typically focused on a narrow range of current landscape factors and have largely ignored the role of land-use history in shaping plant and animal communities and their functional characteristics. Here, we used a unique database of 220,000 land-use records to investigate how 20-y of land-use changes have affected functional diversity across multiple trophic groups (primary producers, mutualists, herbivores, invertebrate predators, and vertebrate predators) in 75 grassland fields with a broad range of land-use histories. The effects of land-use history on multitrophic trait diversity were as strong as other drivers known to impact biodiversity, e.g., grassland management and current landscape composition. The diversity of animal mobility and resource-acquisition traits was lower in landscapes where much of the land had been historically converted from grassland to crop. In contrast, functional biodiversity was higher in landscapes containing old permanent grasslands, most likely because they offer a stable and high-quality habitat refuge for species with low mobility and specialized feeding niches. Our study shows that grassland-to-crop conversion has long-lasting impacts on the functional biodiversity of agricultural ecosystems. Accordingly, land-use legacy effects must be considered in conservation programs aiming to protect agricultural biodiversity. In particular, the retention of permanent grassland sanctuaries within intensive landscapes may offset ecological debts.
Proceedings of the N... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1910023117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 88 citations 88 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!more_vert Proceedings of the N... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1910023117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Elsevier BV Funded by:EC | BIOSTASES, ANR | AGROBIOSEEC| BIOSTASES ,ANR| AGROBIOSEDaniel Montoya; Sabrina Gaba; Claire de Mazancourt; Vincent Bretagnolle; Michel Loreau;International audience; Efficient management of agricultural management should consider multiple services and stakeholders. Yet, it remains unclear how to guarantee ecosystem services for multiple stakeholders' demands, especially considering the observed biodiversity decline following reductions in semi-natural habitat (SNH), and global change. Here, we use an ecosystem service model of intensively-managed agricultural landscapes to derive the best landscape compositions for different stakeholders' demands, and how they vary with stochasticity and the degree of pollination dependence of crops. We analyse three groups of stakeholders assumed to value different ecosystem services most-individual farmers (crop yield per area), agricultural unions (landscape production) and con-servationists (biodiversity). Additionally, we consider a social average scenario that aims at maximizing mul-tifunctionality. Trade-offs among stakeholders' demands strongly depend on the degree of pollination dependence of crops, the strength of environmental and demographic stochasticity, and the relative amount of an ecosystem service demanded by each stakeholder. Intermediate amounts of SNH deliver relatively high levels of the three services (social average). Our analysis further suggests that the current levels of SNH protection lie below these intermediate amounts of SNH in intensively-managed agricultural landscapes. Given the worldwide trends in agriculture and global change, current policies should start to consider factors such as crop type and stochasticity, as they can strongly influence best landscape compositions for different stakeholders. Our results suggest ways of managing landscapes to reconcile several actors' demands and ensure for biodiversity conservation and food production.
Europe PubMed Centra... arrow_drop_down HAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2020License: CC BY NCFull-Text: https://hal.science/hal-02378282/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2019 . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.ecolmodel.2019.108889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 28 citations 28 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down HAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2020License: CC BY NCFull-Text: https://hal.science/hal-02378282/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2019 . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.ecolmodel.2019.108889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 France, United States, Germany, CanadaPublisher:Oxford University Press (OUP) Cooke, Steven J.; Madliger, Christine L.; Cramp, Rebecca L.; Beardall, John; Burness, Gary P.; Chown, Steven L.; Clark, Timothy D.; Dantzer, Ben; Barrera, Erick de la; Fangue, Nann A.; Franklin, Craig E.; Fuller, Andrea; Hawkes, Lucy A.; Hultine, Kevin R.; Hunt, Kathleen E.; Love, Oliver P.; MacMillan, Heath A.; Mandelman, John W.; Mark, Felix C.; Martin, Lynn B.; Newman, Amy E. M.; Nicotra, Adrienne B.; Robinson, Sharon A.; Ropert‐Coudert, Yan; Rummer, Jodie L.; Seebacher, Frank; Todgham, Anne E.; Cooke, Steven,; Madliger, Christine,; Cramp, Rebecca,; Burness, Gary; Chown, Steven,; Clark, Timothy,; De La Barrera, Erick; Fangue, Nann,;AbstractApplying physiological tools, knowledge and concepts to understand conservation problems (i.e. conservation physiology) has become commonplace and confers an ability to understand mechanistic processes, develop predictive models and identify cause-and-effect relationships. Conservation physiology is making contributions to conservation solutions; the number of ‘success stories’ is growing, but there remain unexplored opportunities for which conservation physiology shows immense promise and has the potential to contribute to major advances in protecting and restoring biodiversity. Here, we consider how conservation physiology has evolved with a focus on reframing the discipline to be more inclusive and integrative. Using a ‘horizon scan’, we further explore ways in which conservation physiology can be more relevant to pressing conservation issues of today (e.g. addressing the Sustainable Development Goals; delivering science to support the UN Decade on Ecosystem Restoration), as well as more forward-looking to inform emerging issues and policies for tomorrow. Our horizon scan provides evidence that, as the discipline of conservation physiology continues to mature, it provides a wealth of opportunities to promote integration, inclusivity and forward-thinking goals that contribute to achieving conservation gains. To advance environmental management and ecosystem restoration, we need to ensure that the underlying science (such as that generated by conservation physiology) is relevant with accompanying messaging that is straightforward and accessible to end users.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7125050Data sources: PubMed CentralElectronic Publication Information CenterArticle . 2020Data sources: Electronic Publication Information CentereScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1093/conphys/coaa016&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 32 citations 32 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7125050Data sources: PubMed CentralElectronic Publication Information CenterArticle . 2020Data sources: Electronic Publication Information CentereScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1093/conphys/coaa016&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:The Royal Society Funded by:EC | POLARCLIMSTRESSEC| POLARCLIMSTRESSFrédéric Angelier; Olivier Chastel; Ádám Z. Lendvai; Charline Parenteau; Henri Weimerskirch; John C. Wingfield;Life-history theory predicts that, to optimize their fitness, individuals should increase their reproductive effort as their residual reproductive value decreases. Accordingly, several studies have shown that individuals downregulate their glucocorticoid stress response (a proxy of reproductive investment in vertebrates) as they age, and as the subsequent reproductive value decreases. However, and surprisingly, results appear inconsistent, suggesting that the environmental context or the individual state may affect the relationship between age and reproductive effort. Here, we tested for the first time this hypothesis, and more specifically, whether this attenuation of the corticosterone stress response with advancing age depends on the energetic status of individuals. We compared the influence of age on the corticosterone stress response between fasting and non-fasting breeding snow petrels ( Pagodroma nivea ), an extremely long-lived bird. As expected, we found that the corticosterone stress response was attenuated in old petrels, but only when they were not fasting. Interestingly, this pattern was not apparent in fasting petrels, suggesting that old birds downregulate their corticosterone stress response and increase their parental investment only when they are in good body condition. At the ultimate level, old individuals may maintain a strong corticosterone stress response when fasting because the survival costs of increased stress resistance and parental effort might then outweigh their reproductive benefits.
Biology Letters arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0733&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 6 citations 6 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Biology Letters arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0733&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu
Loading
description Publicationkeyboard_double_arrow_right Article 2021 France, Netherlands, Denmark, Denmark, France, France, France, FrancePublisher:F1000 Research Ltd Funded by:EC | BioExcel-2, EC | EOSC-LifeEC| BioExcel-2 ,EC| EOSC-LifeAnna-Lena Lamprecht; Magnus Palmblad; Jon Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; A. Amor; Salvador Capella-Gutierrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; Carole Goble; Timothy J. Griffin; Paul Groth; Hans Ienasescu; Pratik D. Jagtap; Matúš Kalaš; Vedran Kasalica; Alireza Khanteymoori; Tobias Kuhn; Hailiang Mei; Hervé Ménager; Steffen Möller; Robin A. Richardson; Vincent Robert; Stian Soiland-Reyes; Robert Stevens; Szoke Szaniszlo; Suzan Verberne; Aswin Verhoeven; Katherine Wolstencroft;pmid: 34804501
pmc: PMC8573700
Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack of standards for annotation, assembly, and implementation. Recent technological advances have returned the long-standing vision of automated workflow composition into focus. This article summarizes a recent Lorentz Center workshop dedicated to automated composition of workflows in the life sciences. We survey previous initiatives to automate the composition process, and discuss the current state of the art and future perspectives. We start by drawing the “big picture” of the scientific workflow development life cycle, before surveying and discussing current methods, technologies and practices for semantic domain modelling, automation in workflow development, and workflow assessment. Finally, we derive a roadmap of individual and community-based actions to work toward the vision of automated workflow development in the forthcoming years. A central outcome of the workshop is a general description of the workflow life cycle in six stages: 1) scientific question or hypothesis, 2) conceptual workflow, 3) abstract workflow, 4) concrete workflow, 5) production workflow, and 6) scientific results. The transitions between stages are facilitated by diverse tools and methods, usually incorporating domain knowledge in some form. Formal semantic domain modelling is hard and often a bottleneck for the application of semantic technologies. However, life science communities have made considerable progress here in recent years and are continuously improving, renewing interest in the application of semantic technologies for workflow exploration, composition and instantiation. Combined with systematic benchmarking with reference data and large-scale deployment of production-stage workflows, such technologies enable a more systematic process of workflow development than we know today. We believe that this can lead to more robust, reusable, and sustainable workflows in the future.
NARCIS arrow_drop_down Europe PubMed CentralArticle . 2021 . Peer-reviewedFull-Text: http://europepmc.org/articles/PMC8573700Data sources: PubMed CentralLeiden University Scholarly Publications Repository; NARCISOther literature type . Article . 2021License: CC BYUniversity of Southern Denmark Research Output; F1000ResearchOther literature type . Article . 2021Data sources: University of Southern Denmark Research OutputF1000ResearchArticle . 2021Online Research Database In TechnologyArticle . 2021 . Peer-reviewedData sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.12688/f1000research.54159.1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 7 citations 7 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert NARCIS arrow_drop_down Europe PubMed CentralArticle . 2021 . Peer-reviewedFull-Text: http://europepmc.org/articles/PMC8573700Data sources: PubMed CentralLeiden University Scholarly Publications Repository; NARCISOther literature type . Article . 2021License: CC BYUniversity of Southern Denmark Research Output; F1000ResearchOther literature type . Article . 2021Data sources: University of Southern Denmark Research OutputF1000ResearchArticle . 2021Online Research Database In TechnologyArticle . 2021 . Peer-reviewedData sources: Online Research Database In Technologyadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.12688/f1000research.54159.1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 Italy, United Kingdom, France, United States, Netherlands, United States, Netherlands, Netherlands, United StatesPublisher:Springer Science and Business Media LLC Funded by:NIH | High Performance Simulati..., EC | SyMBioSys, UKRI | MultiMod, flexible manage... +18 projectsNIH| High Performance Simulation Libraries for Systems Biology ,EC| SyMBioSys ,UKRI| MultiMod, flexible management for multi-scale multi-approach models in biology ,NIH| Hardening Software for Rule-based Modeling ,NIH| Core_Training ,NIH| Modeling Early Immunity to Human Influenza Infection ,NIH| COPASI software for modeling and simulation of biochemical networks ,UKRI| CENTRE FOR SYNTHETIC BIOLOGY OF FINE AND SPECIALITY CHEMICALS ,NIH| A predictive multi-scale model of the immune system: An integrated computational resource for interdisciplinary applications. ,NSF| EAGER: A Standard Enabled Workflow for Synthetic Biology ,UKRI| IFS-NET: Insect Food Security NETwork ,NIH| Development and Support of the Pathway Tools Software [SRI Proposal ECU 15-631] ,NIH| National Resource for Cell Analysis and Modeling ,EC| EU-STANDS4PM ,NIH| Bringing BioNetGen Rule-Based Modeling to Virtual Cell Users ,NIH| Toward whole-cell models for precision medicine and synthetic biology ,NIH| Center for Reproducible Systems for Biomedical Modeling ,NIH| Continued Support of Essential SBML Software and Community Resources ,NSF| FET: Medium: Collaborative Research: An Efficient Framework for the Stochastic Verification of Computation and Communication Systems Using Emerging Technologies ,FCT| ERGODiC ,NIH| Genome-scale in silico Model for E.coliSarah M. Keating; Dagmar Waltemath; Matthias König; Fengkai Zhang; Andreas Dräger; Claudine Chaouiya; Frank Bergmann; Andrew Finney; Colin S. Gillespie; Tomáš Helikar; Stefan Hoops; Rahuman S Malik-Sheriff; Stuart L. Moodie; Ion I. Moraru; Chris J. Myers; Aurélien Naldi; Brett G. Olivier; Sven Sahle; James C. Schaff; Lucian P. Smith; Maciej J. Swat; Denis Thieffry; Leandro Watanabe; Darren J. Wilkinson; Michael L. Blinov; Kimberly Begley; James R. Faeder; Harold F. Gómez; Thomas M. Hamm; Yuichiro Inagaki; Wolfram Liebermeister; Allyson L. Lister; Daniel Lucio; Eric Mjolsness; Carole J. Proctor; Karthik Raman; Nicolas Rodriguez; Clifford A. Shaffer; Bruce E. Shapiro; Joerg Stelling; Neil Swainston; Naoki Tanimura; John Wagner; Martin Meier-Schellersheim; Herbert M. Sauro; Bernhard O. Palsson; Hamid Bolouri; Hiroaki Kitano; Akira Funahashi; Henning Hermjakob; John Doyle; Michael Hucka; Richard R. Adams; Nicholas Alexander Allen; Bastian R. Angermann; Marco Antoniotti; Gary D. Bader; Jan Červený; Mélanie Courtot; Christopher Cox; Piero Dalle Pezze; Emek Demir; William S. Denney; Harish Dharuri; Julien Dorier; Dirk Drasdo; Ali Ebrahim; Johannes Eichner; Johan Elf; Lukas Endler; Chris T. Evelo; Christoph Flamm; Ronan M. T. Fleming; Martina Fröhlich; Mihai Glont; Emanuel Gonçalves; Martin Golebiewski; Hovakim Grabski; Alex Gutteridge; Damon Hachmeister; Leonard A. Harris; Benjamin D. Heavner; Ron Henkel; William S. Hlavacek; Bin Hu; Daniel R. Hyduke; Hidde de Jong; Nick Juty; Peter D. Karp; Jonathan R. Karr; Douglas B. Kell; Roland Keller; Ilya Kiselev; Steffen Klamt; Edda Klipp; Christian Knüpfer; Fedor A. Kolpakov; Falko Krause; Martina Kutmon; Camille Laibe; Conor Lawless; Lu Li; Leslie M. Loew; Rainer Machné; Yukiko Matsuoka; Pedro Mendes; Huaiyu Mi; Florian Mittag; Pedro T. Monteiro; Kedar Nath Natarajan; Poul M. F. Nielsen; Tramy Nguyen; Alida Palmisano; Jean-Baptiste Pettit; Thomas Pfau; Robert Phair; Tomas Radivoyevitch; Johann M. Rohwer; Oliver A. Ruebenacker; Julio Saez-Rodriguez; Martin Scharm; Henning Schmidt; Falk Schreiber; Michael Schubert; Roman Schulte; Stuart C. Sealfon; Kieran Smallbone; Sylvain Soliman; Melanie I. Stefan; Devin P. Sullivan; Koichi Takahashi; Bas Teusink; David Tolnay; Ibrahim Vazirabad; Axel von Kamp; Ulrike Wittig; Clemens Wrzodek; Finja Wrzodek; Ioannis Xenarios; Anna Zhukova; Jeremy Zucker;pmc: PMC8411907
pmid: 32845085
Abstract Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction‐based models and packages that extend the core with features suited to other model types including constraint‐based models, reaction‐diffusion models, logical network models, and rule‐based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists build and interact with models. More recently, the rise of multiscale models of whole cells and organs, and new data sources such as single‐cell measurements and live imaging, has precipitated new ways of integrating data with models. We provide our perspectives on the challenges presented by these developments and how SBML Level 3 provides the foundation needed to support this evolution. Over the past two decades, scientists from different fields have been developing SBML, a standard format for encoding computational models in biology and medicine. This article summarizes recent progress and gives perspectives on emerging challenges.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC8411907Data sources: PubMed CentralBOA - Bicocca Open Archive; Molecular Systems Biology; Oxford University Research ArchiveOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYeScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL-Pasteur; INRIA a CCSD electronic archive server; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2020License: CC BYFull-Text: https://hal.inrae.fr/hal-02924909/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.15252/msb.20199110&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 175 citations 175 popularity Top 0.1% influence Top 10% impulse Top 0.1% Powered by BIP!visibility 4visibility views 4 Powered bymore_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC8411907Data sources: PubMed CentralBOA - Bicocca Open Archive; Molecular Systems Biology; Oxford University Research ArchiveOther literature type . Article . 2020 . Peer-reviewedLicense: CC BYeScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL-Pasteur; INRIA a CCSD electronic archive server; Mémoires en Sciences de l'Information et de la Communication; Hal-DiderotArticle . 2020License: CC BYFull-Text: https://hal.inrae.fr/hal-02924909/documentadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.15252/msb.20199110&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Other literature type , Article 2020 FrancePublisher:Elsevier BV Andreas Ravache; Karen Bourgeois; Martin Thibault; Sylvain Dromzée; Henri Weimerskirch; Sophie de Grissac; Aurélien Prudor; Anne Lorrain; Christophe E. Menkès; Valerie Allain; Paco Bustamante; Yves Letourneur; Eric Vidal;International audience; Lunar phase and illumination are known to affect nocturnal behavior of many organisms, particularly through predator-prey interactions. Visual predators can benefit from higher light levels to increase their activity, while prey may decrease their activity to avoid predation. The lower number of nocturnal seabirds observed on colonies during full moon nights has been mostly interpreted as a predation avoidance strategy. However, it is also possible that shearwaters take advantage of the moon's illumination to feed also at night, and stay at sea to forage during full moon nights. We used miniaturized GPS-loggers to obtain 179 tracks from 99 wedge-tailed shearwaters breeding in New Caledonia, to investigate moonlight effects on individual behavior. Lunar phase significantly predicted self-provisioning trip duration, with individuals performing longer trips around the full moon. However, this relationship was not significant during chick-provisioning trips when adults have to frequently return to the colony. Adults mostly returned to the colony during moonlit periods, refuting the predation avoidance theory. Tracked individuals showed an unexpectedly high amount of nocturnal foraging activity (28% of total activity), positively influenced by the presence of the moon. δ15N stable isotope values were significantly related to the percentage of nocturnal foraging, but with a weak relationship, impeding our ability to confirm that wedge-tailed shearwaters fed on different prey when foraging at night. This study suggests that reduced colony attendance around the full moon may be linked to greater at-sea foraging opportunities in distant oceanic areas than to increased predation risk on land.
Horizon / Pleins tex... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2020Data sources: ArchiMer - Institutional Archive of IfremerJournal of Experimental Marine Biology and EcologyArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-InsermArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.jembe.2020.151322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 11 citations 11 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Horizon / Pleins tex... arrow_drop_down ArchiMer - Institutional Archive of IfremerOther literature type . 2020Data sources: ArchiMer - Institutional Archive of IfremerJournal of Experimental Marine Biology and EcologyArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-InsermArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.jembe.2020.151322&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:The Royal Society Funded by:ANR | ANAEE-FR, ANR | AQUATHERM, ANR | PSL +1 projectsANR| ANAEE-FR ,ANR| AQUATHERM ,ANR| PSL ,ANR| DESTRESSAndréaz Dupoué; Frédéric Angelier; Cécile Ribout; Sandrine Meylan; David Rozen-Rechels; Beatriz Decencière; Simon Agostini; Jean-François Le Galliard;Animals use a variety of strategies to avoid acute dehydration and death. Yet, how chronic exposure to sub-lethal dehydration may entail physiological and fitness costs remains elusive. In this study, we experimentally tested if water restriction causes increased oxidative stress (OS) and telomere length (TL) shortening, two well-described mediators of environment–fitness relationships. We exposed 100 yearling female and male common lizards ( Zootoca vivipara ) either to a 51-day period of water restriction or to water ad libitum, followed by 45 days in common garden outdoor conditions. We measured the kinetic changes in OS and TL and found that water-restricted males had enhanced antioxidant defences and decreased oxidative damage at day 36, whereas females did not immediately respond. A month and a half after water restriction, both sexes experienced a drop in antioxidant capacity but only males exhibited significant TL shortening. In the following 3 years, we found that lizards with longer initial TL and those who maintained stronger antioxidant defences experienced higher longevity, irrespective of sex and water restriction. Together, these results unravelled sex-specific responses to water restriction, with potential applications in better understanding the physiological costs of increasing summer droughts as a result of global climate change.
Europe PubMed Centra... arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 17 citations 17 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 France, GermanyPublisher:Elsevier BV Sepideh Esmaeilirad; Alexandra Lai; Gülcin Abbaszade; Juergen Schnelle-Kreis; Ralf Zimmermann; Gaëlle Uzu; Kaspar R. Daellenbach; Francesco Canonaco; Hossein Hassankhany; Mohammad Arhami; Urs Baltensperger; André S. H. Prévôt; James J. Schauer; Jean-Luc Jaffrezo; Vahid Hosseini; Imad El Haddad;pmid: 31835192
International audience; With over 8 million inhabitants and 4 million motor vehicles on the streets, Tehran is one of the most crowded and polluted cities in the Middle East. Frequent exceedances of national daily PM2.5 limit have been reported in this city during the last decade, yet, the chemical composition and sources of fine particles are poorly determined. In the present study, 24-hour PM2.5 samples were collected at two urban sites during two separate campaigns, a one-year period from 2014 to 2015 and another three-month period at the beginning of 2017. Concentrations of organic carbon (OC), elemental carbon (EC), inorganic ions, trace metals and specific organic molecular markers were measured by chemical analysis of filter samples. The dominant mass components were organic matter (OM), sulfate and EC. With a 20% water-soluble organic carbon (WSOC) fraction, the predominance of primary anthropogenic sources (i.e. fossil fuel combustion) was anticipated. A positive matrix factorization (PMF) analysis using the ME-2 (Multilinear Engine-2) solver was then applied to this dataset. 5 factors were identified by Marker-PMF, named as traffic exhaust (TE), biomass burning (BB), industries (Ind.), nitrate-rich and sulfate-rich. Another 4 factors were identified by Metal-PMF, including, dust, vehicles (traffic non-exhaust, TNE), industries (Ind.) and heavy fuel combustion (HFC). Traffic exhaust was the dominant source with 44.5% contribution to total quantified PM2.5 mass. Sulfate-rich (24.2%) and nitrate-rich (18.4%) factors were the next major contributing sources. Dust (4.4%) and biomass burning (6.7%) also had small contributions while the total share of all other factors was < 2%. Investigating the correlations of different factors between the two sampling sites showed that traffic emissions and biomass burning were local, whereas dust, heavy fuel combustion and industrial sources were regional. Results of this study indicate that gas- and particle-phase pollutants emitted from fossil fuel combustion (mobile and stationary) are the principal origin of both primary and secondary fine aerosols in Tehran.
Horizon / Pleins tex... arrow_drop_down Publication Server of Helmholtz Zentrum München (PuSH)Article . 2020Data sources: Publication Server of Helmholtz Zentrum München (PuSH)The Science of The Total EnvironmentArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.scitotenv.2019.135330&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess Routesbronze 35 citations 35 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Horizon / Pleins tex... arrow_drop_down Publication Server of Helmholtz Zentrum München (PuSH)Article . 2020Data sources: Publication Server of Helmholtz Zentrum München (PuSH)The Science of The Total EnvironmentArticle . 2020 . Peer-reviewedLicense: Elsevier TDMData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.scitotenv.2019.135330&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Proceedings of the National Academy of Sciences Funded by:EC | OCEAN SENTINELEC| OCEAN SENTINELHenri Weimerskirch; Julien Collet; Alexandre Corbeau; Adrien Pajot; Floran Hoarau; Cédric Marteau; D. Filippi; Samantha C. Patrick;International audience; With threats to nature becoming increasingly prominent, in order for biodiversity levels to persist, there is a critical need to improve implementation of conservation measures. In the oceans, the surveillance of fisheries is complex and inadequate, such that quantifying and locating nondeclared and illegal fisheries is persistently problematic. Given that these activities dramatically impact oceanic ecosystems, through overexploitation of fish stocks and bycatch of threatened species, innovative ways to monitor the oceans are urgently required. Here, we describe a concept of “Ocean Sentinel” using animals equipped with state-of-the-art loggers which monitor fisheries in remote areas. Albatrosses fitted with loggers detecting and locating the presence of vessels and transmitting the information immediately to authorities allowed an estimation of the proportion of nondeclared fishing vessels operating in national and international waters of the Southern Ocean. We found that in international waters, more than one-third of vessels had no Automatic Identification System operating; in national Exclusive Economic Zones (EEZs), this proportion was lower on average, but variable according to EEZ. Ocean Sentinel was also able to provide unpreceded information on the attraction of seabirds to vessels, giving access to crucial information for risk-assessment plans of threatened species. Attraction differed between species, age, and vessel activity. Fishing vessels attracted more birds than other vessels, and juveniles both encountered fewer vessels and showed a lower attraction to vessels than adults. This study shows that the development of technologies offers the potential of implementing conservation policies by using wide-ranging seabirds to patrol oceans.
Europe PubMed Centra... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefMémoires en Sciences de l'Information et de la CommunicationArticle . 2020Full-Text: https://hal.science/hal-02462482/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1915499117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 59 citations 59 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!download 12download downloads 12 Powered bymore_vert Europe PubMed Centra... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefMémoires en Sciences de l'Information et de la CommunicationArticle . 2020Full-Text: https://hal.science/hal-02462482/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1915499117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Proceedings of the National Academy of Sciences Funded by:EC | DRYFUN, EC | AGREENSKILLSPLUS, ANR | FarmLandEC| DRYFUN ,EC| AGREENSKILLSPLUS ,ANR| FarmLandAuthors: Gaëtane Le Provost; Isabelle Badenhausser; Yoann Le Bagousse-Pinguet; Yann Clough; +6 AuthorsGaëtane Le Provost; Isabelle Badenhausser; Yoann Le Bagousse-Pinguet; Yann Clough; Laura Henckel; Cyrille Violle; Vincent Bretagnolle; Marilyn Roncoroni; Peter Manning; Nicolas Gross;International audience; Land-use change is a major driver of biodiversity loss worldwide. Although biodiversity often shows a delayed response to land-use change, previous studies have typically focused on a narrow range of current landscape factors and have largely ignored the role of land-use history in shaping plant and animal communities and their functional characteristics. Here, we used a unique database of 220,000 land-use records to investigate how 20-y of land-use changes have affected functional diversity across multiple trophic groups (primary producers, mutualists, herbivores, invertebrate predators, and vertebrate predators) in 75 grassland fields with a broad range of land-use histories. The effects of land-use history on multitrophic trait diversity were as strong as other drivers known to impact biodiversity, e.g., grassland management and current landscape composition. The diversity of animal mobility and resource-acquisition traits was lower in landscapes where much of the land had been historically converted from grassland to crop. In contrast, functional biodiversity was higher in landscapes containing old permanent grasslands, most likely because they offer a stable and high-quality habitat refuge for species with low mobility and specialized feeding niches. Our study shows that grassland-to-crop conversion has long-lasting impacts on the functional biodiversity of agricultural ecosystems. Accordingly, land-use legacy effects must be considered in conservation programs aiming to protect agricultural biodiversity. In particular, the retention of permanent grassland sanctuaries within intensive landscapes may offset ecological debts.
Proceedings of the N... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1910023117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 88 citations 88 popularity Top 1% influence Top 10% impulse Top 1% Powered by BIP!more_vert Proceedings of the N... arrow_drop_down Proceedings of the National Academy of SciencesArticle . 2020 . Peer-reviewedData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1073/pnas.1910023117&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:Elsevier BV Funded by:EC | BIOSTASES, ANR | AGROBIOSEEC| BIOSTASES ,ANR| AGROBIOSEDaniel Montoya; Sabrina Gaba; Claire de Mazancourt; Vincent Bretagnolle; Michel Loreau;International audience; Efficient management of agricultural management should consider multiple services and stakeholders. Yet, it remains unclear how to guarantee ecosystem services for multiple stakeholders' demands, especially considering the observed biodiversity decline following reductions in semi-natural habitat (SNH), and global change. Here, we use an ecosystem service model of intensively-managed agricultural landscapes to derive the best landscape compositions for different stakeholders' demands, and how they vary with stochasticity and the degree of pollination dependence of crops. We analyse three groups of stakeholders assumed to value different ecosystem services most-individual farmers (crop yield per area), agricultural unions (landscape production) and con-servationists (biodiversity). Additionally, we consider a social average scenario that aims at maximizing mul-tifunctionality. Trade-offs among stakeholders' demands strongly depend on the degree of pollination dependence of crops, the strength of environmental and demographic stochasticity, and the relative amount of an ecosystem service demanded by each stakeholder. Intermediate amounts of SNH deliver relatively high levels of the three services (social average). Our analysis further suggests that the current levels of SNH protection lie below these intermediate amounts of SNH in intensively-managed agricultural landscapes. Given the worldwide trends in agriculture and global change, current policies should start to consider factors such as crop type and stochasticity, as they can strongly influence best landscape compositions for different stakeholders. Our results suggest ways of managing landscapes to reconcile several actors' demands and ensure for biodiversity conservation and food production.
Europe PubMed Centra... arrow_drop_down HAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2020License: CC BY NCFull-Text: https://hal.science/hal-02378282/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2019 . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.ecolmodel.2019.108889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 28 citations 28 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down HAL Descartes; Mémoires en Sciences de l'Information et de la Communication; HAL-IRDArticle . 2020License: CC BY NCFull-Text: https://hal.science/hal-02378282/documentHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2019 . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.ecolmodel.2019.108889&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 France, United States, Germany, CanadaPublisher:Oxford University Press (OUP) Cooke, Steven J.; Madliger, Christine L.; Cramp, Rebecca L.; Beardall, John; Burness, Gary P.; Chown, Steven L.; Clark, Timothy D.; Dantzer, Ben; Barrera, Erick de la; Fangue, Nann A.; Franklin, Craig E.; Fuller, Andrea; Hawkes, Lucy A.; Hultine, Kevin R.; Hunt, Kathleen E.; Love, Oliver P.; MacMillan, Heath A.; Mandelman, John W.; Mark, Felix C.; Martin, Lynn B.; Newman, Amy E. M.; Nicotra, Adrienne B.; Robinson, Sharon A.; Ropert‐Coudert, Yan; Rummer, Jodie L.; Seebacher, Frank; Todgham, Anne E.; Cooke, Steven,; Madliger, Christine,; Cramp, Rebecca,; Burness, Gary; Chown, Steven,; Clark, Timothy,; De La Barrera, Erick; Fangue, Nann,;AbstractApplying physiological tools, knowledge and concepts to understand conservation problems (i.e. conservation physiology) has become commonplace and confers an ability to understand mechanistic processes, develop predictive models and identify cause-and-effect relationships. Conservation physiology is making contributions to conservation solutions; the number of ‘success stories’ is growing, but there remain unexplored opportunities for which conservation physiology shows immense promise and has the potential to contribute to major advances in protecting and restoring biodiversity. Here, we consider how conservation physiology has evolved with a focus on reframing the discipline to be more inclusive and integrative. Using a ‘horizon scan’, we further explore ways in which conservation physiology can be more relevant to pressing conservation issues of today (e.g. addressing the Sustainable Development Goals; delivering science to support the UN Decade on Ecosystem Restoration), as well as more forward-looking to inform emerging issues and policies for tomorrow. Our horizon scan provides evidence that, as the discipline of conservation physiology continues to mature, it provides a wealth of opportunities to promote integration, inclusivity and forward-thinking goals that contribute to achieving conservation gains. To advance environmental management and ecosystem restoration, we need to ensure that the underlying science (such as that generated by conservation physiology) is relevant with accompanying messaging that is straightforward and accessible to end users.
Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7125050Data sources: PubMed CentralElectronic Publication Information CenterArticle . 2020Data sources: Electronic Publication Information CentereScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1093/conphys/coaa016&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen gold 32 citations 32 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Europe PubMed Centra... arrow_drop_down Europe PubMed CentralArticle . 2020Full-Text: http://europepmc.org/articles/PMC7125050Data sources: PubMed CentralElectronic Publication Information CenterArticle . 2020Data sources: Electronic Publication Information CentereScholarship - University of CaliforniaArticle . 2020Data sources: eScholarship - University of CaliforniaHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1093/conphys/coaa016&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eudescription Publicationkeyboard_double_arrow_right Article , Other literature type 2020 FrancePublisher:The Royal Society Funded by:EC | POLARCLIMSTRESSEC| POLARCLIMSTRESSFrédéric Angelier; Olivier Chastel; Ádám Z. Lendvai; Charline Parenteau; Henri Weimerskirch; John C. Wingfield;Life-history theory predicts that, to optimize their fitness, individuals should increase their reproductive effort as their residual reproductive value decreases. Accordingly, several studies have shown that individuals downregulate their glucocorticoid stress response (a proxy of reproductive investment in vertebrates) as they age, and as the subsequent reproductive value decreases. However, and surprisingly, results appear inconsistent, suggesting that the environmental context or the individual state may affect the relationship between age and reproductive effort. Here, we tested for the first time this hypothesis, and more specifically, whether this attenuation of the corticosterone stress response with advancing age depends on the energetic status of individuals. We compared the influence of age on the corticosterone stress response between fasting and non-fasting breeding snow petrels ( Pagodroma nivea ), an extremely long-lived bird. As expected, we found that the corticosterone stress response was attenuated in old petrels, but only when they were not fasting. Interestingly, this pattern was not apparent in fasting petrels, suggesting that old birds downregulate their corticosterone stress response and increase their parental investment only when they are in good body condition. At the ultimate level, old individuals may maintain a strong corticosterone stress response when fasting because the survival costs of increased stress resistance and parental effort might then outweigh their reproductive benefits.
Biology Letters arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0733&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen bronze 6 citations 6 popularity Top 10% influence Average impulse Top 10% Powered by BIP!more_vert Biology Letters arrow_drop_down Biology LettersArticle . 2020 . Peer-reviewedLicense: Royal Society Data Sharing and AccessibilityData sources: CrossrefHAL - UPEC / UPEM; HAL-Pasteur; HAL-Inserm; Hal-DiderotArticle . 2020add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1098/rsbl.2019.0733&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu