This code and data are linked to F1000Research article: (https://doi.org/10.12688/f1000research.24156.1) Abstract Background: Community containment is one of the common methods used to mitigate infectious disease outbreaks. The effectiveness of such method depends on ho...

nfcore/viralrecon is a bioinformatics analysis pipeline used to perform assembly and intra-host/low-frequency variant calling for viral samples. The pipeline supports short-read Illumina sequencing data from both shotgun (e.g. sequencing directly from clinical samples) ...

Release of codes and data to reproduce results and visualizations of the article.

KnetMiner 5.0 What's new? KnetMiner 5.0 comes with a number of new features, speed improvements and a new freemium/premium version. Key Features KnetMiner (https://knetminer.com) now also offers a range of Free and Pro features. The free version is a perfect starting po...

This Github repository hosts the data used for implementing a virtual field trip for geological mapping in the Cantabrian Zone (NW Spain). The course was designed for students of the Geology BSc degree of the Cardiff University (UK) in substitution for the usual residen...

CoMo COVID-19 App repository.

R scripts for running analysis of Diet during COVID-19 pandemic using Twitter data

First release of the FAIRisk library, including source code, documentation, demo notebooks and streamlit application. FAIRisk combines open-source globally available data related with risk scales and country preparedness for epidemic crisis with post-COVID-19 data. It a...

Scoring for predicting spread of SARS-CoV-2 mutations

A REDCap module to facilitate the scheduling and data management of COVID-19 testing for first responders. This project was created by a multidisciplinary team at the University of Florida to support testing of first responders in Alachua County, Florida and the surroun...