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  • European Marine Science
  • 2012-2021
  • FR
  • EU
  • Hal-Diderot

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Rosalia Ferreri; Simona Genovese; Marco Barra; Ilaria Biagiotti; +13 Authors

    Size at first sexual maturity (L50) represents an important life-history trait that needs to be considered in the development of management measures as it provides fundamental information for avoiding the exploitation of younger individuals. L50 is known to display variability due to fishing pressure, geographical gradients, and environmental features. In this study, to investigate L50 variability among areas in the Mediterranean and Black Seas, maturity ogives of anchovies (Engraulis encrasicolus) were estimated by considering samples collected during the anchovy spawning period in the framework of the MEDiterranean International Acoustic Survey (MEDIAS) program. Anchovy size and sexual maturity data from several geographical subareas (GSAs), i.e., northern Spain, Gulf of Lion, Tyrrhenian Sea, Strait of Sicily, Adriatic Sea and Black Sea, were gathered according to a standard methodological protocol. Maturity ogives were estimated by a logistic regression considering total length, condition factor, sex and GSA. The obtained results showed a significant effect of the condition factor, in that fish in better condition reached maturity earlier, and the results also indicated differences in L50 values among the areas and between the sexes, with males reaching maturity at lower lengths than females. Even though the obtained L50 estimates are relative to the spawning period only, the variability observed at the Mediterranean basin scale highlights the importance of explicitly considering specific habitat characteristics when providing management advice based on an ecosystem approach for fisheries. SI

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mediterranean Marine...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Mediterranean Marine Science
    Article . 2021 . Peer-reviewed
    Data sources: Crossref
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    Mediterranean Marine Science
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    CNR ExploRA
    Article . 2021
    Data sources: CNR ExploRA
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mediterranean Marine...arrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Mediterranean Marine Science
      Article . 2021 . Peer-reviewed
      Data sources: Crossref
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Mediterranean Marine Science
      Article
      License: CC BY NC
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      CNR ExploRA
      Article . 2021
      Data sources: CNR ExploRA
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Karl J. Wittmann; Pierre Chevaldonné;

    SCUBA diving explorations of three islands off Dumont d’Urville Station at the coast of Adélie Land, East Antarctica, enabled the observation of marine ice caves. Sampling in this unusual habitat yielded a total of three species of Mysidae, altogether previously poorly known or unknown to science. Pseudomma kryotroglodytumsp. nov. is described, based on the structure of the antennal scale, telson and on cornea-like lateral portions set off against the main body of eyeplates. Mysidetes illigi is re-established at species level after almost a century in synonymy. Re-descriptions are provided for M. illigi and M. hanseni, based on types and ice cave materials. Keys to the Southern Ocean species of Pseudomma and to the world-wide species of Mysidetes are given. Phylogenetic trees are provided for the genera Pseudomma and Mysidetes. 18S rDNA sequences of P. kryotroglodytum differ from GenBank sequences of other Pseudomma species. First sequence data are given for species of the genus Mysidetes: 18S differs between the two examined species and COI is quite diverse between and within species. We found previously unknown, probably sensorial structures in these ice cave species: in P. kryotroglodytum, the basal segment of the antennula shows a pit-like depression with striated pad on the bottom and a median cyst, connected with the bottom of the eyeplate cleft. M. illigi shows a female homologue of the appendix masculina bearing a field of modified setae. Subsequent investigations demonstrated these structures also in species from other habitats. The feeding apparatus and stomach contents of the three ice cave species point to brushing of small particles (detritus, microalgae) from available surfaces, such as sediment, rock and the ice surface. Differences in the feeding apparatus are very subtle between the two Mysidetes species. The high content of fat bodies in M. hanseni could help it to survive periods of starvation. The large storage volume of the foregut in P. kryotroglodytum points to the collection of food with low nutritional quality and could help to balance strongly fluctuating food availability. Summer specimens of M. hanseni showed a bimodal frequency of developmental stages in the marsupium and bimodal size-frequency distribution of free-living stages. The females with younger brood (embryos) were, on average, larger and carried more marsupial young than those with older brood (nauplioid larvae). All examined incubating and spent females showed (almost) empty foreguts and empty ovarian tubes, suggesting possible semelparity and death following the release of young. The absence of juveniles and immature females from summer samples suggests that growth and accumulation of fat and yolk occur outside ice caves, while such caves could be used by fattened adults as shelter for brooding. A provisional interpretation proposes a biannual life cycle for M. hanseni, superimposed with shifted breeding schedules, the latter characterised by early breeding and late breeding females, probably in response to harsh physical and trophic conditions along the continental coast of Antarctica.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODO; ZooKeysarrow_drop_down
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    ZENODO; ZooKeys
    Article . 2021 . Peer-reviewed
    License: CC BY
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    ZooKeys
    Article . 2021
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    ZooKeys
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    DOAJ
    Article . 2021
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    Hal-Diderot
    Article . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODO; ZooKeysarrow_drop_down
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      ZENODO; ZooKeys
      Article . 2021 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      ZooKeys
      Article . 2021
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      ZooKeys
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      DOAJ
      Article . 2021
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      Hal-Diderot
      Article . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wongnak, Phrutsamon; Bord, Séverine; Jacquot, Maude; Agoulon, Albert; +21 Authors

    Abstract Ixodes ricinus ticks (Acari: Ixodidae) are the most important vector for Lyme borreliosis in Europe. As environmental and climate changes might affect the distribution and activity of tick populations, this study aimed to determine the effects of environmental factors, i.e., meteorological, bioclimatic, and habitat characteristics on questing activity of I. ricinus nymphs across diverse climatic types in France over an 8-year period. Questing activity was observed using a repeated removal sampling design with a cloth-dragging technique in 11 sampling sites from 7 tick observatories from 2014 to 2021 at approximately 1-month intervals, involving 631 sampling campaigns. Three phenological patterns were observed, potentially following a climatic gradient. The mixed-effects negative binomial regression revealed that observed nymph counts were driven by different interval-average meteorological variables, including one-month average temperature, previous-season average temperature, and half-year average minimum relative humidity. The interaction effects indicated that the phenology in colder climates peaked differently from that of warmer climates. Also, the land cover characteristics that support the highest baseline abundance were moderate forest fragmentation with transition borders with agricultural areas. Finally, our model could potentially be used to predict seasonal human-tick exposure risks in France that could contribute to mitigating Lyme borreliosis risks.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Scientific Reportsarrow_drop_down
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    https://doi.org/10.21203/rs.3....
    Preprint . 2021
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    DOAJ
    Article . 2022
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    Authors: Guille Peguero; Miquel Ferrín; Jordi Sardans; Erik Verbruggen; +18 Authors

    AbstractUnderstanding the mechanisms that drive the change of biotic assemblages over space and time is the main quest of community ecology. Assessing the relative importance of dispersal and environmental species selection in a range of organismic sizes and motilities has been a fruitful strategy. A consensus for whether spatial and environmental distances operate similarly across spatial scales and taxa, however, has yet to emerge. We used censuses of four major groups of organisms (soil bacteria, fungi, ground insects, and trees) at two observation scales (1‐m2 sampling point vs. 2,500‐m2 plots) in a topographically standardized sampling design replicated in two tropical rainforests with contrasting relationships between spatial distance and nutrient availability. We modeled the decay of assemblage similarity for each taxon set and site to assess the relative contributions of spatial distance and nutrient availability distance. Then, we evaluated the potentially structuring effect of tree composition over all other taxa. The similarity of nutrient content in the litter and topsoil had a stronger and more consistent selective effect than did dispersal limitation, particularly for bacteria, fungi, and trees at the plot level. Ground insects, the only group assessed with the capacity of active dispersal, had the highest species turnover and the flattest nonsignificant distance−decay relationship, suggesting that neither dispersal limitation nor nutrient availability were fundamental drivers of their community assembly at this scale of analysis. Only the fungal communities at one of our study sites were clearly coordinated with tree composition. The spatial distance at the smallest scale was more important than nutrient selection for the bacteria, fungi, and insects. The lower initial similarity and the moderate variation in composition identified by these distance‐decay models, however, suggested that the effects of stochastic sampling were important at this smaller spatial scale. Our results highlight the importance of nutrients as one of the main environmental drivers of rainforest communities irrespective of organismic or propagule size and how the overriding effect of the analytical scale influences the interpretation, leading to the perception of greater importance of dispersal limitation and ecological drift over selection associated with environmental niches at decreasing observation scales.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Agritroparrow_drop_down
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    Ecology
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    Ecology
    Article . 2021 . Peer-reviewed
    License: CC BY NC
    Data sources: Crossref
    Ecology
    Article . 2021
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      Ecology
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      Ecology
      Article . 2021 . Peer-reviewed
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      Ecology
      Article . 2021
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    Authors: Bonnefond, Pascal; Laurain, Olivier; Exertier, Pierre; Calzas, Michel; +2 Authors

    The geodetic Corsica site was set up in 1998 in order to perform altimeter calibration of the TOPEX/Poseidon (T/P) mission and subsequently, Jason-1, OSTM/Jason-2, Jason-3 and more recently Sentinel-6 Michael Freilich (launched on November, 21 2020). The aim of the present study held in June 2015 is to validate a recently developed GNSS-based sea level instrument (called CalNaGeo) that is designed with the intention to map Sea Surface Heights (SSH) over large areas. This has been undertaken using the well-defined geodetic infrastructure deployed at Senetosa Cape, and involved the estimation of the stability of the waterline (and thus the instantaneous separation of a GNSS antenna from water level) as a function of the velocity at which the instrument is towed. The results show a largely linear relationship which is approximately 1 mm/(m/s) up to a maximum practical towing speed of similar to 10 knots (similar to 5 m/s). By comparing to the existing "geoid" map, it is also demonstrated that CalNaGeo can measure a sea surface slope with a precision better than 1 mm/km (similar to 2.5% of the physical slope). Different processing techniques are used and compared including GNSS Precise Point Positioning (PPP, where the goal is to extend SSH mapping far from coastal GNSS reference stations) showing an agreement at the 1-2 cm level.

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    Marine Geodesy
    Article . 2021 . Peer-reviewed
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    Marine Geodesy
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      Marine Geodesy
      Article . 2021 . Peer-reviewed
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    Authors: Stéven Yvenou; Maxime Allioux; Alexander Slobodkin; Galina Slobodkina; +2 Authors

    The biochemical pathways of anaerobic sulfur disproportionation are only partially deciphered, and the mechanisms involved in the first step of S0-disproportionation remain unknown. Here, we present the results of sequencing and analysis of the complete genome of Dissulfurimicrobium hydrothermale strain Sh68T, one of two strains isolated to date known to grow exclusively by anaerobic disproportionation of inorganic sulfur compounds. Dissulfurimicrobium hydrothermale Sh68T is a motile, thermophilic, anaerobic, chemolithoautotrophic microorganism isolated from a hydrothermal pond at Uzon caldera, Kamchatka, Russia. It is able to produce energy and grow by disproportionation of elemental sulfur, sulfite and thiosulfate. Its genome consists of a circular chromosome of 2,025,450 base pairs, has a G + C content of 49.66% and a completion of 97.6%. Genomic data suggest that CO2 assimilation is carried out by the Wood–Ljungdhal pathway and that central anabolism involves the gluconeogenesis pathway. The genome of strain Sh68T encodes the complete gene set of the dissimilatory sulfate reduction pathway, some of which are likely to be involved in sulfur disproportionation. A short sequence protein of unknown function present in the genome of strain Sh68T is conserved in the genomes of a large panel of other S0-disproportionating bacteria and was absent from the genomes of microorganisms incapable of elemental sulfur disproportionation. We propose that this protein may be involved in the first step of elemental sulfur disproportionation, as S0 is poorly soluble and unable to cross the cytoplasmic membrane in this form.

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    Microorganisms
    Other literature type . Article . 2021 . Peer-reviewed
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    Microorganisms
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    Microorganisms
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      Microorganisms
      Other literature type . Article . 2021 . Peer-reviewed
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      Microorganisms
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      Microorganisms
      Article . 2022
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    Authors: Kristelle Hughes; Raimana Ho; Stéphane Greff; Gaëtan Herbette; +4 Authors

    The term cosmetopoeia refers to the use of plants in folks’ cosmetics. The aerial parts of Bidens pilosa L., the leaves of Calophyllum inophyllum L. and the fruits of Fagraea berteroana A.Gray ex Benth are traditionally used in French Polynesia for hair and skin care. During the hair cycle, dermal papilla cells and their interaction with epithelial cells are essential to promote hair follicle elongation. The aim of our investigations was the identification of metabolites from these three plants and chemical families responsible for their hair growth activity. A bioactivity-based molecular network was produced by mapping the correlation between features obtained from LC-MS/MS data and dermal papilla cell proliferation, using the Pearson correlation coefficient. The analyses pointed out glycosylated flavonols and phenolic acids from B. pilosa and C. inophyllum, along with C-flavonoids, iridoids and secoiridoids from F. berteroana, as potential bioactive molecules involved in the proliferation of hair follicle dermal papilla cells. Our results highlight the metabolites of the plant species potentially involved in the induction of hair follicle growth and support the traditional uses of these plants in hair care.

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    Molecules
    Other literature type . Article . 2021 . Peer-reviewed
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    Molecules
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    Molecules
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      Molecules
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      Molecules
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    Authors: Theresa Diener; Theresa Diener; Ingo Sasgen; Cécile Agosta; +4 Authors

    The dynamic stability of the Antarctic Ice Sheet is one of the largest uncertainties in projections of future global sea-level rise. Essential for improving projections of the ice sheet evolution is the understanding of the ongoing trends and accelerations of mass loss in the context of ice dynamics. Here, we examine accelerations of mass change of the Antarctic Ice Sheet from 2002 to 2020 using data from the GRACE (Gravity Recovery and Climate Experiment; 2002–2017) and its follow-on GRACE-FO (2018-present) satellite missions. By subtracting estimates of net snow accumulation provided by re-analysis data and regional climate models from GRACE/GRACE-FO mass changes, we isolate variations in ice-dynamic discharge and compare them to direct measurements based on the remote sensing of the surface-ice velocity (2002–2017). We show that variations in the GRACE/GRACE-FO time series are modulated by variations in regional snow accumulation caused by large-scale atmospheric circulation. We show for the first time that, after removal of these surface effects, accelerations of ice-dynamic discharge from GRACE/GRACE-FO agree well with those independently derived from surface-ice velocities. For 2002–2020, we recover a discharge acceleration of -5.3 ± 2.2 Gt yr−2 for the entire ice sheet; these increasing losses originate mainly in the Amundsen and Bellingshausen Sea Embayment regions (68%), with additional significant contributions from Dronning Maud Land (18%) and the Filchner-Ronne Ice Shelf region (13%). Under the assumption that the recovered rates and accelerations of mass loss persisted independent of any external forcing, Antarctica would contribute 7.6 ± 2.9 cm to global mean sea-level rise by the year 2100, more than two times the amount of 2.9 ± 0.6 cm obtained by linear extrapolation of current GRACE/GRACE-FO mass loss trends.

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    Frontiers in Earth Science
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    DOAJ
    Article . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Nouibat, A.; Stehly, L.; Paul, A.; Schwartz, S.; +6 Authors

    SUMMARYA full understanding of the dynamics of mountain ranges such as the Alps requires the integration of available geological and geophysical knowledge into a lithospheric-scale 3-D geological model. As a first stage in the construction of this geo-model, we derive a new 3-D shear wave velocity model of the Alpine region, with a spatial resolution of a few tens of kilometres, making it possible to compare with geological maps. We use four years of continuous vertical-component seismic noise records to compute noise correlations between more than 950 permanent broad-band stations complemented by ∼600 temporary stations from the AlpArray sea-land seismic network and the Cifalps and EASI linear arrays. A specific pre-processing is applied to records of ocean–bottom seismometers in the Liguro-Provençal basin to clean them from instrumental and oceanic noises. We first perform a 2-D transdimensional inversion of the traveltimes of Rayleigh waves to compute group-velocity maps from 4 to $150\, \mathrm{ s}$. The data noise level treated as an unknown parameter is determined with a Hierarchical Bayes method. A Fast Marching Eikonal solver is used to update ray path geometries during the inversion. We use next the group-velocity maps and their uncertainties to derive a 3-D probabilistic Vs model. The probability distributions of Vs at depth and the probability of presence of an interface are estimated at each location by exploring a set of 130 million synthetic four-layer 1-D Vs models. The obtained probabilistic model is refined using a linearized inversion. Throughout the inversion for Vs, we include the water column where necessary. Our Vs model highlights strong along-strike changes of the lithospheric structure, particularly in the subduction complex between the European and Adriatic plates. In the South-Western Alps, our model confirms the existence of a low-velocity structure at $50-80\, \mathrm{ km}$ depth in the continuation of the European continental crust beneath the subduction wedge. This deep low-velocity anomaly progressively disappears towards the North-Western and Central Alps. The European crust includes lower crustal low-velocity zones and a Moho jump of $\sim \, 8-12$ km beneath the western boundary of the External Crystalline Massifs of the North-Western Alps. The striking fit between our Vs model and the receiver function migrated depth section along the Cifalps profile documents the reliability of the Vs model. In light of this reliability and with the aim to building a 3-D geological model, we re-examine the geological structures highlighted along the Cifalps profile.

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    Geophysical Journal International
    Article . 2021 . Peer-reviewed
    License: OUP Standard Publication Reuse
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Julien Kincaid-Smith; Alan Tracey; Ronaldo de Carvalho Augusto; Ingo Bulla; +11 Authors

    Schistosomes cause schistosomiasis, the world’s second most important parasitic disease after malaria in terms of public health and social-economic impacts. A peculiar feature of these dioecious parasites is their ability to produce viable and fertile hybrid offspring. Originally only present in the tropics, schistosomiasis is now also endemic in southern Europe. Based on the analysis of two genetic markers the European schistosomes had previously been identified as hybrids between the livestock- and the human-infective species Schistosoma bovis and Schistosoma haematobium, respectively. Here, using PacBio long-read sequencing technology we performed genome assembly improvement and annotation of S. bovis, one of the parental species for which no satisfactory genome assembly was available. We then describe the whole genome introgression levels of the hybrid schistosomes, their morphometric parameters (eggs and adult worms) and their compatibility with two European snail strains used as vectors (Bulinus truncatus and Planorbarius metidjensis). Schistosome-snail compatibility is a key parameter for the parasites life cycle progression, and thus the capability of the parasite to establish in a given area. Our results show that this Schistosoma hybrid is strongly introgressed genetically, composed of 77% S. haematobium and 23% S. bovis origin. This genomic admixture suggests an ancient hybridization event and subsequent backcrosses with the human-specific species, S. haematobium, before its introduction in Corsica. We also show that egg morphology (commonly used as a species diagnostic) does not allow for accurate hybrid identification while genetic tests do. PLoS Neglected Tropical Diseases, 15 (12) ISSN:1935-2727 ISSN:1935-2735

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    Research Collection
    Article . 2021
    License: CC BY
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    PLoS Neglected Tropical Diseases
    Article . 2021 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    PLoS Neglected Tropical Diseases
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    ETH Zürich Research Collection
    Article . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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      PLoS Neglected Tropical Diseases
      Article . 2021 . Peer-reviewed
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      PLoS Neglected Tropical Diseases
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      ETH Zürich Research Collection
      Article . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Rosalia Ferreri; Simona Genovese; Marco Barra; Ilaria Biagiotti; +13 Authors

    Size at first sexual maturity (L50) represents an important life-history trait that needs to be considered in the development of management measures as it provides fundamental information for avoiding the exploitation of younger individuals. L50 is known to display variability due to fishing pressure, geographical gradients, and environmental features. In this study, to investigate L50 variability among areas in the Mediterranean and Black Seas, maturity ogives of anchovies (Engraulis encrasicolus) were estimated by considering samples collected during the anchovy spawning period in the framework of the MEDiterranean International Acoustic Survey (MEDIAS) program. Anchovy size and sexual maturity data from several geographical subareas (GSAs), i.e., northern Spain, Gulf of Lion, Tyrrhenian Sea, Strait of Sicily, Adriatic Sea and Black Sea, were gathered according to a standard methodological protocol. Maturity ogives were estimated by a logistic regression considering total length, condition factor, sex and GSA. The obtained results showed a significant effect of the condition factor, in that fish in better condition reached maturity earlier, and the results also indicated differences in L50 values among the areas and between the sexes, with males reaching maturity at lower lengths than females. Even though the obtained L50 estimates are relative to the spawning period only, the variability observed at the Mediterranean basin scale highlights the importance of explicitly considering specific habitat characteristics when providing management advice based on an ecosystem approach for fisheries. SI

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    Mediterranean Marine Science
    Article . 2021 . Peer-reviewed
    Data sources: Crossref
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    Mediterranean Marine Science
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    CNR ExploRA
    Article . 2021
    Data sources: CNR ExploRA
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      Mediterranean Marine Science
      Article . 2021 . Peer-reviewed
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      Mediterranean Marine Science
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      CNR ExploRA
      Article . 2021
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    Authors: Karl J. Wittmann; Pierre Chevaldonné;

    SCUBA diving explorations of three islands off Dumont d’Urville Station at the coast of Adélie Land, East Antarctica, enabled the observation of marine ice caves. Sampling in this unusual habitat yielded a total of three species of Mysidae, altogether previously poorly known or unknown to science. Pseudomma kryotroglodytumsp. nov. is described, based on the structure of the antennal scale, telson and on cornea-like lateral portions set off against the main body of eyeplates. Mysidetes illigi is re-established at species level after almost a century in synonymy. Re-descriptions are provided for M. illigi and M. hanseni, based on types and ice cave materials. Keys to the Southern Ocean species of Pseudomma and to the world-wide species of Mysidetes are given. Phylogenetic trees are provided for the genera Pseudomma and Mysidetes. 18S rDNA sequences of P. kryotroglodytum differ from GenBank sequences of other Pseudomma species. First sequence data are given for species of the genus Mysidetes: 18S differs between the two examined species and COI is quite diverse between and within species. We found previously unknown, probably sensorial structures in these ice cave species: in P. kryotroglodytum, the basal segment of the antennula shows a pit-like depression with striated pad on the bottom and a median cyst, connected with the bottom of the eyeplate cleft. M. illigi shows a female homologue of the appendix masculina bearing a field of modified setae. Subsequent investigations demonstrated these structures also in species from other habitats. The feeding apparatus and stomach contents of the three ice cave species point to brushing of small particles (detritus, microalgae) from available surfaces, such as sediment, rock and the ice surface. Differences in the feeding apparatus are very subtle between the two Mysidetes species. The high content of fat bodies in M. hanseni could help it to survive periods of starvation. The large storage volume of the foregut in P. kryotroglodytum points to the collection of food with low nutritional quality and could help to balance strongly fluctuating food availability. Summer specimens of M. hanseni showed a bimodal frequency of developmental stages in the marsupium and bimodal size-frequency distribution of free-living stages. The females with younger brood (embryos) were, on average, larger and carried more marsupial young than those with older brood (nauplioid larvae). All examined incubating and spent females showed (almost) empty foreguts and empty ovarian tubes, suggesting possible semelparity and death following the release of young. The absence of juveniles and immature females from summer samples suggests that growth and accumulation of fat and yolk occur outside ice caves, while such caves could be used by fattened adults as shelter for brooding. A provisional interpretation proposes a biannual life cycle for M. hanseni, superimposed with shifted breeding schedules, the latter characterised by early breeding and late breeding females, probably in response to harsh physical and trophic conditions along the continental coast of Antarctica.

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    ZENODO; ZooKeys
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    Authors: Wongnak, Phrutsamon; Bord, Séverine; Jacquot, Maude; Agoulon, Albert; +21 Authors

    Abstract Ixodes ricinus ticks (Acari: Ixodidae) are the most important vector for Lyme borreliosis in Europe. As environmental and climate changes might affect the distribution and activity of tick populations, this study aimed to determine the effects of environmental factors, i.e., meteorological, bioclimatic, and habitat characteristics on questing activity of I. ricinus nymphs across diverse climatic types in France over an 8-year period. Questing activity was observed using a repeated removal sampling design with a cloth-dragging technique in 11 sampling sites from 7 tick observatories from 2014 to 2021 at approximately 1-month intervals, involving 631 sampling campaigns. Three phenological patterns were observed, potentially following a climatic gradient. The mixed-effects negative binomial regression revealed that observed nymph counts were driven by different interval-average meteorological variables, including one-month average temperature, previous-season average temperature, and half-year average minimum relative humidity. The interaction effects indicated that the phenology in colder climates peaked differently from that of warmer climates. Also, the land cover characteristics that support the highest baseline abundance were moderate forest fragmentation with transition borders with agricultural areas. Finally, our model could potentially be used to predict seasonal human-tick exposure risks in France that could contribute to mitigating Lyme borreliosis risks.

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    https://doi.org/10.21203/rs.3....
    Preprint . 2021
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    Authors: Guille Peguero; Miquel Ferrín; Jordi Sardans; Erik Verbruggen; +18 Authors

    AbstractUnderstanding the mechanisms that drive the change of biotic assemblages over space and time is the main quest of community ecology. Assessing the relative importance of dispersal and environmental species selection in a range of organismic sizes and motilities has been a fruitful strategy. A consensus for whether spatial and environmental distances operate similarly across spatial scales and taxa, however, has yet to emerge. We used censuses of four major groups of organisms (soil bacteria, fungi, ground insects, and trees) at two observation scales (1‐m2 sampling point vs. 2,500‐m2 plots) in a topographically standardized sampling design replicated in two tropical rainforests with contrasting relationships between spatial distance and nutrient availability. We modeled the decay of assemblage similarity for each taxon set and site to assess the relative contributions of spatial distance and nutrient availability distance. Then, we evaluated the potentially structuring effect of tree composition over all other taxa. The similarity of nutrient content in the litter and topsoil had a stronger and more consistent selective effect than did dispersal limitation, particularly for bacteria, fungi, and trees at the plot level. Ground insects, the only group assessed with the capacity of active dispersal, had the highest species turnover and the flattest nonsignificant distance−decay relationship, suggesting that neither dispersal limitation nor nutrient availability were fundamental drivers of their community assembly at this scale of analysis. Only the fungal communities at one of our study sites were clearly coordinated with tree composition. The spatial distance at the smallest scale was more important than nutrient selection for the bacteria, fungi, and insects. The lower initial similarity and the moderate variation in composition identified by these distance‐decay models, however, suggested that the effects of stochastic sampling were important at this smaller spatial scale. Our results highlight the importance of nutrients as one of the main environmental drivers of rainforest communities irrespective of organismic or propagule size and how the overriding effect of the analytical scale influences the interpretation, leading to the perception of greater importance of dispersal limitation and ecological drift over selection associated with environmental niches at decreasing observation scales.

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    Ecology
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    Ecology
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    Authors: Bonnefond, Pascal; Laurain, Olivier; Exertier, Pierre; Calzas, Michel; +2 Authors

    The geodetic Corsica site was set up in 1998 in order to perform altimeter calibration of the TOPEX/Poseidon (T/P) mission and subsequently, Jason-1, OSTM/Jason-2, Jason-3 and more recently Sentinel-6 Michael Freilich (launched on November, 21 2020). The aim of the present study held in June 2015 is to validate a recently developed GNSS-based sea level instrument (called CalNaGeo) that is designed with the intention to map Sea Surface Heights (SSH) over large areas. This has been undertaken using the well-defined geodetic infrastructure deployed at Senetosa Cape, and involved the estimation of the stability of the waterline (and thus the instantaneous separation of a GNSS antenna from water level) as a function of the velocity at which the instrument is towed. The results show a largely linear relationship which is approximately 1 mm/(m/s) up to a maximum practical towing speed of similar to 10 knots (similar to 5 m/s). By comparing to the existing "geoid" map, it is also demonstrated that CalNaGeo can measure a sea surface slope with a precision better than 1 mm/km (similar to 2.5% of the physical slope). Different processing techniques are used and compared including GNSS Precise Point Positioning (PPP, where the goal is to extend SSH mapping far from coastal GNSS reference stations) showing an agreement at the 1-2 cm level.

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    Marine Geodesy
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    Authors: Stéven Yvenou; Maxime Allioux; Alexander Slobodkin; Galina Slobodkina; +2 Authors

    The biochemical pathways of anaerobic sulfur disproportionation are only partially deciphered, and the mechanisms involved in the first step of S0-disproportionation remain unknown. Here, we present the results of sequencing and analysis of the complete genome of Dissulfurimicrobium hydrothermale strain Sh68T, one of two strains isolated to date known to grow exclusively by anaerobic disproportionation of inorganic sulfur compounds. Dissulfurimicrobium hydrothermale Sh68T is a motile, thermophilic, anaerobic, chemolithoautotrophic microorganism isolated from a hydrothermal pond at Uzon caldera, Kamchatka, Russia. It is able to produce energy and grow by disproportionation of elemental sulfur, sulfite and thiosulfate. Its genome consists of a circular chromosome of 2,025,450 base pairs, has a G + C content of 49.66% and a completion of 97.6%. Genomic data suggest that CO2 assimilation is carried out by the Wood–Ljungdhal pathway and that central anabolism involves the gluconeogenesis pathway. The genome of strain Sh68T encodes the complete gene set of the dissimilatory sulfate reduction pathway, some of which are likely to be involved in sulfur disproportionation. A short sequence protein of unknown function present in the genome of strain Sh68T is conserved in the genomes of a large panel of other S0-disproportionating bacteria and was absent from the genomes of microorganisms incapable of elemental sulfur disproportionation. We propose that this protein may be involved in the first step of elemental sulfur disproportionation, as S0 is poorly soluble and unable to cross the cytoplasmic membrane in this form.

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    Microorganisms
    Other literature type . Article . 2021 . Peer-reviewed
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      Microorganisms
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      Microorganisms
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    Authors: Kristelle Hughes; Raimana Ho; Stéphane Greff; Gaëtan Herbette; +4 Authors

    The term cosmetopoeia refers to the use of plants in folks’ cosmetics. The aerial parts of Bidens pilosa L., the leaves of Calophyllum inophyllum L. and the fruits of Fagraea berteroana A.Gray ex Benth are traditionally used in French Polynesia for hair and skin care. During the hair cycle, dermal papilla cells and their interaction with epithelial cells are essential to promote hair follicle elongation. The aim of our investigations was the identification of metabolites from these three plants and chemical families responsible for their hair growth activity. A bioactivity-based molecular network was produced by mapping the correlation between features obtained from LC-MS/MS data and dermal papilla cell proliferation, using the Pearson correlation coefficient. The analyses pointed out glycosylated flavonols and phenolic acids from B. pilosa and C. inophyllum, along with C-flavonoids, iridoids and secoiridoids from F. berteroana, as potential bioactive molecules involved in the proliferation of hair follicle dermal papilla cells. Our results highlight the metabolites of the plant species potentially involved in the induction of hair follicle growth and support the traditional uses of these plants in hair care.

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    Molecules
    Other literature type . Article . 2021 . Peer-reviewed
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    Molecules
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    Molecules
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      Molecules
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      Molecules
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      Molecules
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    Authors: Theresa Diener; Theresa Diener; Ingo Sasgen; Cécile Agosta; +4 Authors

    The dynamic stability of the Antarctic Ice Sheet is one of the largest uncertainties in projections of future global sea-level rise. Essential for improving projections of the ice sheet evolution is the understanding of the ongoing trends and accelerations of mass loss in the context of ice dynamics. Here, we examine accelerations of mass change of the Antarctic Ice Sheet from 2002 to 2020 using data from the GRACE (Gravity Recovery and Climate Experiment; 2002–2017) and its follow-on GRACE-FO (2018-present) satellite missions. By subtracting estimates of net snow accumulation provided by re-analysis data and regional climate models from GRACE/GRACE-FO mass changes, we isolate variations in ice-dynamic discharge and compare them to direct measurements based on the remote sensing of the surface-ice velocity (2002–2017). We show that variations in the GRACE/GRACE-FO time series are modulated by variations in regional snow accumulation caused by large-scale atmospheric circulation. We show for the first time that, after removal of these surface effects, accelerations of ice-dynamic discharge from GRACE/GRACE-FO agree well with those independently derived from surface-ice velocities. For 2002–2020, we recover a discharge acceleration of -5.3 ± 2.2 Gt yr−2 for the entire ice sheet; these increasing losses originate mainly in the Amundsen and Bellingshausen Sea Embayment regions (68%), with additional significant contributions from Dronning Maud Land (18%) and the Filchner-Ronne Ice Shelf region (13%). Under the assumption that the recovered rates and accelerations of mass loss persisted independent of any external forcing, Antarctica would contribute 7.6 ± 2.9 cm to global mean sea-level rise by the year 2100, more than two times the amount of 2.9 ± 0.6 cm obtained by linear extrapolation of current GRACE/GRACE-FO mass loss trends.

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    Frontiers in Earth Science
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    Authors: Nouibat, A.; Stehly, L.; Paul, A.; Schwartz, S.; +6 Authors

    SUMMARYA full understanding of the dynamics of mountain ranges such as the Alps requires the integration of available geological and geophysical knowledge into a lithospheric-scale 3-D geological model. As a first stage in the construction of this geo-model, we derive a new 3-D shear wave velocity model of the Alpine region, with a spatial resolution of a few tens of kilometres, making it possible to compare with geological maps. We use four years of continuous vertical-component seismic noise records to compute noise correlations between more than 950 permanent broad-band stations complemented by ∼600 temporary stations from the AlpArray sea-land seismic network and the Cifalps and EASI linear arrays. A specific pre-processing is applied to records of ocean–bottom seismometers in the Liguro-Provençal basin to clean them from instrumental and oceanic noises. We first perform a 2-D transdimensional inversion of the traveltimes of Rayleigh waves to compute group-velocity maps from 4 to $150\, \mathrm{ s}$. The data noise level treated as an unknown parameter is determined with a Hierarchical Bayes method. A Fast Marching Eikonal solver is used to update ray path geometries during the inversion. We use next the group-velocity maps and their uncertainties to derive a 3-D probabilistic Vs model. The probability distributions of Vs at depth and the probability of presence of an interface are estimated at each location by exploring a set of 130 million synthetic four-layer 1-D Vs models. The obtained probabilistic model is refined using a linearized inversion. Throughout the inversion for Vs, we include the water column where necessary. Our Vs model highlights strong along-strike changes of the lithospheric structure, particularly in the subduction complex between the European and Adriatic plates. In the South-Western Alps, our model confirms the existence of a low-velocity structure at $50-80\, \mathrm{ km}$ depth in the continuation of the European continental crust beneath the subduction wedge. This deep low-velocity anomaly progressively disappears towards the North-Western and Central Alps. The European crust includes lower crustal low-velocity zones and a Moho jump of $\sim \, 8-12$ km beneath the western boundary of the External Crystalline Massifs of the North-Western Alps. The striking fit between our Vs model and the receiver function migrated depth section along the Cifalps profile documents the reliability of the Vs model. In light of this reliability and with the aim to building a 3-D geological model, we re-examine the geological structures highlighted along the Cifalps profile.

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    Geophysical Journal International
    Article . 2021 . Peer-reviewed
    License: OUP Standard Publication Reuse
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    Authors: Julien Kincaid-Smith; Alan Tracey; Ronaldo de Carvalho Augusto; Ingo Bulla; +11 Authors

    Schistosomes cause schistosomiasis, the world’s second most important parasitic disease after malaria in terms of public health and social-economic impacts. A peculiar feature of these dioecious parasites is their ability to produce viable and fertile hybrid offspring. Originally only present in the tropics, schistosomiasis is now also endemic in southern Europe. Based on the analysis of two genetic markers the European schistosomes had previously been identified as hybrids between the livestock- and the human-infective species Schistosoma bovis and Schistosoma haematobium, respectively. Here, using PacBio long-read sequencing technology we performed genome assembly improvement and annotation of S. bovis, one of the parental species for which no satisfactory genome assembly was available. We then describe the whole genome introgression levels of the hybrid schistosomes, their morphometric parameters (eggs and adult worms) and their compatibility with two European snail strains used as vectors (Bulinus truncatus and Planorbarius metidjensis). Schistosome-snail compatibility is a key parameter for the parasites life cycle progression, and thus the capability of the parasite to establish in a given area. Our results show that this Schistosoma hybrid is strongly introgressed genetically, composed of 77% S. haematobium and 23% S. bovis origin. This genomic admixture suggests an ancient hybridization event and subsequent backcrosses with the human-specific species, S. haematobium, before its introduction in Corsica. We also show that egg morphology (commonly used as a species diagnostic) does not allow for accurate hybrid identification while genetic tests do. PLoS Neglected Tropical Diseases, 15 (12) ISSN:1935-2727 ISSN:1935-2735

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    Research Collection
    Article . 2021
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    PLoS Neglected Tropical Diseases
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    PLoS Neglected Tropical Diseases
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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      PLoS Neglected Tropical Diseases
      Article . 2021 . Peer-reviewed
      License: CC BY
      Data sources: Crossref
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      PLoS Neglected Tropical Diseases
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      License: CC BY
      Data sources: UnpayWall
      ETH Zürich Research Collection
      Article . 2021
      License: CC BY
      Data sources: Datacite
      addClaim

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